Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq19 107 2e-18 seq1 104 3e-17 >seq19 Length=197207 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||||| ||| || ||||| ||||| || || |||||||| || || ||| Sbjct 102248 CCTCCTCTCAAACGCAGCACAAGGTGCAACGTACTTTCTTTCTGGATATTATAATCCGAT 102307 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || | | || || | ||||| || || || |||| |||||||| || | || Sbjct 102308 AACGTCCTACCCTCCTCCAATTGCTTACCAGCAAAAATCAGACGCTGCTGATCAGGAGGG 102367 Query 46487 ACGCTCTCCTTGTCCATGA-TCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || |||||||| |||| |||| ||| | ||| | || | || | | |||||| Sbjct 102368 ATGCCTTCCTTGTC-ATGAATCTTAGCCTTCACCGTATCAACAGAATCCGTAGGTTCCAC 102426 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || || || || || | || ||||||||||| ||||| Sbjct 102427 CTCCAGAGTAATCGTCTTCCCAGTTAAAGTCTTAACAAAGATCTGCAT 102474 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | | ||| || ||||| | || || || || ||||| ||||| |||| | Sbjct 101792 CCTCCTCTCAGTCTCAAGACGAGATGAATAGTGCTTTCTTTCTGGATGTTGTAATCGGCT 101851 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || || ||||| || ||||| |||| ||||| ||||| | || Sbjct 101852 AATGTCCGACCCTCATCCAGTTGCTTACCAGCGAAAATCAGACGCTGTTGGTCCGGGGGA 101911 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| ||||| ||| | || | || | ||| | | ||| || Sbjct 101912 ATACCTTCTTTGTCTTGAATCTTGGCCTTAACGGTATCGACAGAGTCCGTTGGTTCGACT 101971 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | || || || ||||| |||| ||||| || |||||||||||| Sbjct 101972 TCGAGAGTAATCGTCTTGCCAGTCAAGGTTTTGACGAAGATTTGCATT 102019 >seq1 Length=711979 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || |||||||| | || || | || ||||||||||| Sbjct 179593 CTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCATCCAATTGTTTGCCGGCGAA 179652 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||||||||||| || || | || | || ||||| ||| ||||| ||| | || Sbjct 179653 TATCAAGCGCTGTTGATCCGGAGGAATGCCTTCCTTATCCTGAATCTTGGCCTTAACGGT 179712 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | | |||| | | || || |||| ||| | ||| || |||||||| || || || Sbjct 179713 CTCGATAGAGTCGGTGGGCTCAACCTCCAGCGTCAAGGTCTTACCCGTCAGAGTCTTGAC 179772 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 179773 GAATATCTGCAT 179784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235086289880