Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq23 120 3e-22 seq19 104 2e-17 seq1 84.2 2e-11 >seq23 Length=179919 Score = 120 bits (132), Expect = 3e-22 Identities = 130/169 (77%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958 |||||||| || | |||||||||||| |||||||||||||||||||| || | ||||| Sbjct 161525 CAAAGTCGGTGTGGAGGCCCTCGTCCCTTGAAATGAGTTCGTTGCTGAAGGTGAGGCCGG 161584 Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018 ||| ||| || ||||| |||| ||| || |||||| ||| ||| ||||| |||| || Sbjct 161585 GCAAGAGTCCACGTTTCTTGAACCAGAAGATGGCGCAAAAAGAGCCAGAAAATAAGATGC 161644 Query 133019 CCTCGACGGCCGCGAAAGCC-ACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||| | ||| ||| || | || || ||| | || ||| ||||| Sbjct 161645 CTTCGACTG-CGCAAAATCCTAGTAGTCGTTCGGCAAAAGTG--TTCTT 161690 >seq19 Length=197207 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| | || ||||| || || || |||| ||||| | || Sbjct 102019 AATGCAAATCTTCGTCAAAACCTTGACTGGCAAGACGATTACTCTCGAAGTCGAACCAAC 101960 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| || | || |||| | || || | |||||||| || |||||| | ||||| Sbjct 101959 GGACTCTGTCGATACCGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCGGACCA 101900 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || |||| ||| || || || ||||| || | || || | ||| ||||| Sbjct 101899 ACAGCGTCTGATTTTCGCTGGTAAGCAACTGGATGAGGGTCGGACATTAGCCGATTACAA 101840 Query 38423 CATCCA-AAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||| |||| || | ||| | || || | ||||||| || Sbjct 101839 CATCCAGAAAGAAAGC-ACTATTCATCTCGTCTTGAGACTGAGAGGAGG 101792 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || ||| | || || || || || ||| | || || ||| |||| Sbjct 102247 AATGCAGATCTTTGTCAAGACGTTAACTGGTAAGACGATTACCCTGGAAGTGGAGCCCAC 102188 Query 38303 CGACA-GCGTGCAAACGCT--TAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||| | || ||| | ||| | || || | ||||| || || || || | || Sbjct 102187 GGACACGATTG---ACGTTGTTAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCTGA 102131 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 |||||||| || |||| ||||||||||||||| || || | | || | ||| || Sbjct 102130 TCAACAGCGTCTGATTTTCGCGGGCAAACAGCTCGATGAAGGTAGAACGTTGTCCGATTA 102071 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || |||||| || ||||| | ||||| ||||||||||| || Sbjct 102070 CAACATTCAGAAGGAAAGCACACTGCACCTTGTGCTCCGTTTGAGAGGTGG 102020 >seq1 Length=711979 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || || || ||||| || ||| | || | || || ||| ||||| Sbjct 179784 ATGCAGATATTCGTCAAGACTCTGACGGGTAAGACCTTGACGCTGGAGGTTGAGCCCACC 179725 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | || |||| | || || | || || || || ||||| | || ||| Sbjct 179724 GACTCTATCGAGACCGTTAAGGCCAAGATTCAGGATAAGGAAGGCATTCCTCCGGATCAA 179665 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| |||||||| |||| || | ||||| || || |||||| Sbjct 179664 CAGCGCTTGATATTCGCCGGCAAACAATTGGATGATGGCCGCACTCTTTCGGATTACAAC 179605 Query 38424 ATCCAAAAGGA 38434 ||||| ||||| Sbjct 179604 ATCCAGAAGGA 179594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169867736960