Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq19 109 2e-18 seq35 98.7 4e-15 seq1 93.3 2e-13 >seq19 Length=197207 Score = 109 bits (120), Expect = 2e-18 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || | |||||||| || ||||| || || || || | | Sbjct 102247 AATGCAGATCTTTGTCAAGACGTTAACTGGTAAGACGATTACCCTGGAAGTGGAGCCCAC 102188 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||| | | |||| || ||||| || |||||||| || ||||||||||| Sbjct 102187 GGACACGATTGACGTTGTTAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCA 102128 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| ||| | |||||| | || ||||| || || || || ||||| ||| | ||||| || Sbjct 102127 ACAGCGTCTGATTTTCGCGGGCAAACAGCTCGATGAAGGTAGAACGTTGTCCGATTACAA 102068 Query 391229 TATTGATAAGGATGCAACACTTCAC 391253 ||| | ||||| ||||| ||| Sbjct 102067 CATTCAGAAGGAAAGCACACTGCAC 102043 Score = 96.9 bits (106), Expect = 1e-14 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| ||||| ||||||| || || |||||||| || || ||| || | Sbjct 102019 AATGCAAATCTTCGTCAAAACCTTGACTGGCAAGACGATTACTCTCGAAGTCGAACCAAC 101960 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | || | |||| || |||||||| || ||||| ||||| || || || Sbjct 101959 GGACTCTGTCGATACCGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCGGACCA 101900 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| ||| | |||||| | || || ||||| || || || | || || || ||||| || Sbjct 101899 ACAGCGTCTGATTTTCGCTGGTAAGCAACTGGATGAGGGTCGGACATTAGCCGATTACAA 101840 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | || || || |||| | || || |||||||||||| Sbjct 101839 CATCCAGAAAGAAAGCACTATTCATCTCGTCTTGAGACTGAGAGGA 101794 Score = 86.0 bits (94), Expect = 2e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || ||||| || | ||||| || || |||||||| || || ||| | | Sbjct 102474 ATGCAGATCTTTGTTAAGACTTTAACTGGGAAGACGATTACTCTGGAGGTGGAACCTACG 102415 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 ||| |||| | | || || ||||| || |||||||| || ||||||||||| Sbjct 102414 GATTCTGTTGATACGGTGAAGGCTAAGATTCATGACAAGGAAGGCATCCCTCCTGATCAG 102355 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | ||||| | || || ||| | || || || || || || ||||||||||| Sbjct 102354 CAGCGTCTGATTTTTGCTGGTAAGCAATTGGAGGAGGGTAGGACGTTATCGGATTATAAT 102295 Query 391230 AT 391231 || Sbjct 102294 AT 102293 >seq35 Length=138074 Score = 98.7 bits (108), Expect = 4e-15 Identities = 189/276 (68%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| | || || || || || ||||| || ||||| || || || || ||||| || Sbjct 46859 GCAGTGGTGACAGTACCGGCGTACTTCAACGACGCACAGCGACAGGCGACCAAAGACGCT 46918 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 ||| || | || | || ||| | ||||||||||| ||||| ||||| || || | Sbjct 46919 GGAACCATCTCGGGGCTGAACGTTATCCGAATTATTAACGAACCGACAGCGGCGGCAATC 46978 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 || || || | ||| ||| | || | || || || ||| |||| | ||||| Sbjct 46979 GCTTACGG-GTTGGA----CAAGA-AAGGCGGTGAGAAGAACATTCTAGTGTACGATTTG 47032 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561 ||||| || ||| |||| ||| | ||| | ||||| | || || |||||||| Sbjct 47033 GGTGGTGGCACTTTTGATGTATCTCTCCTTACTATTGACAACGGAGTTTTTGAAGTGGTC 47092 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGAT 451597 || |||||||| || || ||| | || ||||||||| Sbjct 47093 GCGACCAATGGAGACACACATTTGGGCGGTGAAGAT 47128 >seq1 Length=711979 Score = 93.3 bits (102), Expect = 2e-13 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||| ||||| || | || || || ||||| | | Sbjct 179784 ATGCAGATATTCGTCAAGACTCTGACGGGTAAGACCTTGACGCTGGAGGTTGAGCCCACC 179725 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || || || | |||| || ||||| ||||||||||| |||||||| |||||| Sbjct 179724 GACTCTATCGAGACCGTTAAGGCCAAGATTCAGGATAAGGAAGGCATTCCTCCGGATCAA 179665 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || || || ||| | || |||||| | || ||||| | ||| | ||||||| || Sbjct 179664 CAGCGCTTGATATTCGCCGGCAAACAATTGGATGATGGCCGCACTCTTTCGGATTACAAC 179605 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | || | ||| | || | ||||| ||||| Sbjct 179604 ATCCAGAAGGAGTCTACCATCCACCTTGTCCTCAGACTCAGAGG 179561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975706527784652