Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq18 311 1e-79 seq9 156 5e-33 seq35 145 1e-29 >seq18 Length=195987 Score = 311 bits (344), Expect = 1e-79 Identities = 1064/1648 (65%), Gaps = 34/1648 (2%) Strand=Plus/Minus Query 6518 TAACAGTAGTTTTCGAGACCATTCTTCGCCTCGAC---CTTTTTCGCGTACTTTTCATCT 6574 || |||||||| |||||||| ||||| || |||| ||| ||| | || |||| Sbjct 173328 TAGCAGTAGTTCTCGAGACCGTTCTTAGCGTCGATGCGCTTCTTCTGGAGCT---CATCC 173272 Query 6575 TCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTC 6634 ||| | || |||| || || || |||||||| || || ||||| | || | ||| Sbjct 173271 TCAGCCTTGAACTTCTCGGCTTCCTGGACCATTTTGTCGATGTCGGACTGAGAAAGTCTG 173212 Query 6635 CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTT 6694 ||||| || || || || || ||||| | | || |||| |||||| || | || Sbjct 173211 CCCTTCTCGTTGGTGATGGTGATCTTGTTGCTCTTGCCCGTGGCCTTTTCGACGGCGGAC 173152 Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754 || |||| || || || || || |||||||| | || | ||||| || || | Sbjct 173151 ACGTTCAGGATGCCGTTGGCGTCCACATCGAAAGTGACTTCGATTTGAGGCACGCCGCGG 173092 Query 6755 GGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTC 6814 || |||| || || || | | || | || || | |||| | | | | Sbjct 173091 GGAGCGGGGGGGATGCCATCGAGGTGGAACTTGCCCAGGAGGTTGTTGTGCACAGTGAGC 173032 Query 6815 TTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTGTGCCGTTG 6872 | ||||| |||||| |||| | ||| | ||||| || || || || || | Sbjct 173031 TGGCGTTCGCCTTCAAAGACCTGGATTAGGACACCG--GGCTGGTTGTCGGCATAGGTGG 172974 Query 6873 AGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAA 6932 |||| |||| ||||| | || || || || || || ||| | | || | | Sbjct 172973 TGAAGGTTTGCGTCTTCTTGGTCGGGATGGTAGTGTTCCTGTCAATGAGACGTGTGAACA 172914 Query 6933 TACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTT 6992 ||| || ||||| || || || |||| ||| || || |||| || | | ||| | Sbjct 172913 CACCGCCGGCCGTTTCCAGACCGAGCGACAAAGGCGTGACATCCAGCAGAAGGATGTCCT 172854 Query 6993 GAACAGATTCGTT---CCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATG 7049 | | ||||| | ||| || | ||| | || || || | || ||||| | Sbjct 172853 GGATCTTCTCGTTAGTCGAGTCA---GTAAGGATACCAGCCTGCACAGCGGCACCGTAAG 172797 Query 7050 CGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATA 7109 | || ||||| |||||||| || | | || || ||| || || || | | Sbjct 172796 CCACAGCCTCGTCGGGGTTGATGGAGCGGCAGGGCTCCTTGCCGCCGAAGTACTCGGTAA 172737 Query 7110 ACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTT 7169 ||||| || | || |||||||| || || ||||| ||||| || ||||| | ||| Sbjct 172736 TGATTTGCTGGACCTTGGGGATTCGGGTGGAACCACCAACCAAGACAATTTCGTGCAC-- 172679 Query 7170 TCGA---TTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTAC 7226 ||| ||| ||| ||| | ||| |||| || ||||| |||||||| || || Sbjct 172678 -CGAGCGTTTGTCGCACTTGGCGTCCTGAAGGACCTTGTCGACGGGTTCCATGCACTTCT 172620 Query 7227 GGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAA 7286 ||| ||||||| ||| || || || || |||||||| | | ||| || | || | Sbjct 172619 TGAAGTAGTCCATGTTCAGGTCTTCGAACCGAGCACGGGTGACGTTTGTTGAGTAGTCGA 172560 Query 7287 CGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCT 7346 || ||| | | |||||| |||||||||| | || | | ||| | |||| || Sbjct 172559 TACCCTCGAAGAGCGAATCGATTTCAATGGAGGCCTGGGTGGCGGAACTGAGAGTTCTCT 172500 Query 7347 TTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTT 7406 | |||||||| || || || || | || || || ||||| | | | | | || Sbjct 172499 TGGCGCGCTCGCAGGCGGTACGGAGGCGTCGCAGTGCACGGGCGGAGCTGTTCAGGTCGC 172440 Query 7407 TCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAATCGAAAT 7463 |||| ||| | || || || || | | ||| |||| ||| | | ||||||| Sbjct 172439 TCTTGTGTCTGCGCTTGAAGTCCTGGCAACAGTACTCGACAAGGCGGTTG---TCGAAAT 172383 Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523 | ||||| |||||||| || || || || || || |||||||| ||||| ||| | |||| Sbjct 172382 CCTCACCGCCCAAGTGCGTGTCACCAGCCGTGGCCTTGACTTCGAAGATGCCTTCCTCAA 172323 Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTAT 7583 || | | | || ||||| || || || ||||| ||||| || ||||| || ||| | | Sbjct 172322 TGGTGAGGAGAGAGACATCGAAGGTGCCGCCACCGAGGTCGAAGATGAGCACATTCTTCT 172263 Query 7584 CGTCGTCTTTG---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAA 7640 || | | | | ||||| || | ||||| |||||||| || || || || || || | Sbjct 172262 CGCCCGCGTCGGCCTTCTTGTCCAAGCCGTATGCGATAGCTGCAGCAGTCGGCTCGTTGA 172203 Query 7641 TAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCG 7700 | || || || | || |||||||| | | ||||| || || || || || || | Sbjct 172202 TGATGCGGAGCACCTGGAGACCAGCAATGGCGCCGGCATCCTTGGTTGCCTGGCGCTGAG 172143 Query 7701 AATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACG 7760 ||||||| ||||| || ||||| || | ||| || | ||| || ||| | ||||| || | Sbjct 172142 AATCGTTGAAGTACGCAGGGACGGTAATGACAGCCTGCGTCACCTTCGTTCCGAGGTAAG 172083 Query 7761 ATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACT 7820 || ||| | || ||||| || | | ||||| | |||||||| || || ||| Sbjct 172082 CCTCAGCGGTCTCCTTCATCTTAATCAACACCATGGCCGAAATCTCCTCGGCGTGGAACG 172023 Query 7821 GTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAA 7880 ||||| | || | | | | || ||||||| || || | | || | || | | Sbjct 172022 TCTTCGTCGCTCCCTGATACTGCACCTCAATCACAGGCTTGCCAGTAGGGTCAGGCTTCA 171963 Query 7881 CCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGA 7940 |||| | | ||| | ||||| || || || | || ||||| | || | Sbjct 171962 CCTTGAAAGGCCAGTGCTTCATGTCAGACTGTACAGCATCATCTTGGAACTTCCGACCAA 171903 Query 7941 TAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCG 8000 | | |||||| || ||||| || ||||| |||||| | || |||||||||||||| Sbjct 171902 TCAAACGCTTAGCGTCAAACACAGTGTTCGCCGGGTTCTTCGCCACTTGGTTCTTCGCCG 171843 Query 8001 CGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGAT 8060 |||| || || | ||| || | | ||||| || ||||| || ||||| |||| | Sbjct 171842 CGTCACCAATCAAACGCTCCGAGT---CAGTAAAGGCCACGTAAGAAGGGGTAGTTCTGT 171786 Query 8061 TCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAAT 8120 | || || ||||| ||||||||||| || | || | || ||| | || || || | Sbjct 171785 TACCCTGATCGTTTGCAATAATTTCGACACCCTCAGGTCGCACCACGGCCACACAGGAGT 171726 Query 8121 ACGTTGTTCCTAAATCAATACCGATTGC 8148 | || || || |||||||| || | ||| Sbjct 171725 AGGTCGTACCCAAATCAATGCCTACTGC 171698 >seq9 Length=285593 Score = 156 bits (172), Expect = 5e-33 Identities = 627/963 (65%), Gaps = 41/963 (4%) Strand=Plus/Minus Query 105055 TCAGCGAGACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGAACGTTTCCCG 105114 || || | ||| |||| ||| || || ||||||||||| ||||| || || || | || Sbjct 71388 TCGGCCAAACCTTGAATACCGATGCCAATGGGTCTGTGGCGCATGTTGGA--CTTCCTCG 71331 Query 105115 T--TTTCGGTTGGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAACCATTT 105172 | || |||||| ||| | ||||| |||||||| ||||| | ||||| | | Sbjct 71330 TGGCCTCAACAGGGTAATGATTTCTGTCAATCACCTTGTTCAAGTTTCTCGTAACTACAT 71271 Query 105173 TCGTAACACGATGTAACTCTTCATGGTTAAAC--TCGTTCTTCTCGACATCAACGTATTT 105230 || ||||| | | ||| | || |||| ||| | || | ||| || | || Sbjct 71270 GGGTGACACGTCTCAGTTTTTCGTAGTCAAACGATCG--GCTATCAAGATCGACAAACTT 71213 Query 105231 TGGTAACGCGATTGATGCGAGATTACATACGGCGGTTTCTTCCTTATCCGTAAACTCCAG 105290 ||| || | | || ||||| || ||||| || | || || | ||| |||||| Sbjct 71212 TGGCAAGGACAACGAAGCGAGGTTGCATACAGCTATCTCATCAGGTGCGGTATACTCCAC 71153 Query 105291 AATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGACTTTTC 105350 ||||| || || | ||| ||||| ||| ||||| | | ||| ||||| | ||||| Sbjct 71152 TATTTCAGTGCAGAGATTGCTTGATTGAATAGTACCCAAATTTTTCTGGTT-GCTTTTTC 71094 Query 105351 -ATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTTAATAA 105409 || |||||||| ||||||| | |||| ||||| |||||| ||||||||| | || Sbjct 71093 TGTTGCACGCGTCCTTGTAAACTAGGAATGGCGTTCCAGTTTCAATTTGGGATTGTAGAA 71034 Query 105410 TTGCTTTCCAAATCTCCGAAGCTG-GTACAACTTTAGTTGCGAT----ACCTTCAGATTC 105464 | || ||| | ||| || | | || | ||| || ||||| | || Sbjct 71033 TGGCGAACCATA---ACGATTGTGCCTTGATCTGT--TTGACATAACGACCTTGATTCTC 70979 Query 105465 GTATTTCTCGTAAAGATCTTCAAACTCTTTACCGT-ACACGTCTGAAAGACCCTTTGCCT 105523 || || ||| || |||||||||||||| || | | | || | || || | | Sbjct 70978 ATACTTTATGTACAGCTCTTCAAACTCTTTTCCATAAGAGGTGTCAA--GTCCAGGACAT 70921 Query 105524 GA-TCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCT 105582 | | |||||| | || |||| |||||| |||| || | || |||||| | || Sbjct 70920 AAGTGAGGACACATTAAACTCCAAGCACCATCAGATTGTACTCTTTCCATGAATAGGTCG 70861 Query 105583 GGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAA 105642 | ||||| | ||| ||| | ||||| ||| ||||| | ||| || ||| Sbjct 70860 GATATCCATAGAGCTAGAAATAAGTCTCTTGCTCTCTGTTCTTCTTTACCATGGTTCTTC 70801 Query 105643 CGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGAC 105702 || | ||| | ||| |||| | ||| || |||||||| || || |||| ||| | || Sbjct 70800 CGGAGTTCAATAAAGTCGAACACATCAGCATGCCATGGCTCCAAGTAGATTGCGAATGAG 70741 Query 105703 CCTTTACG---ACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTAT---ACACTCGT 105756 || || || | || |||| | ||||| | || ||| || | |||| Sbjct 70740 CCCTTGCGTTTGCCACCTCCTTGGTCTACATAGCGAGC---ACAGTCATTGAAAACTCTG 70684 Query 105757 AACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTT--ATTTG 105814 | ||||||||| || || | | | ||||||| ||||| || | |||| | || | | Sbjct 70683 AGCATTGGAATGATTCCGTTCGCTCTTCCATTGGTTCC-CGCA-ATGTAAGTTCCTGTAG 70626 Query 105815 CACGTACATCGTGAACGTGTAA-CCCAATACCCCCAGCCCACTTACTGATACGCGCACAC 105873 | | || | ||||| || || ||||||||| || || | || ||||| | || || Sbjct 70625 CCCTGACTTTATGAAC-TGCAAGCCCAATACCTCCTGCATATTTGCTGATGAGTGCGCAT 70567 Query 105874 TCTTTTACTGTATCGTAAATACCGTCGATACTATCTTC-CTTATTCGCAATCAGGAAACA 105932 ||||| ||| || | ||||| |||||||||| || ||| || | |||||||| Sbjct 70566 GATTTTAATGTCTCAAATATACCTGCGATACTATCCTCTGCCATTTGC-AGAAGGAAACA 70508 Query 105933 CGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAA 105992 || ||||| || ||||| | || || |||||||||| || || || |||||| | || Sbjct 70507 GGAGGACATCTGAGGTCTTGCCGTCCCTGCATTGAACAAGGTAGGGGTAGCATGAGTAAA 70448 Query 105993 CAA 105995 || Sbjct 70447 GAA 70445 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 104365 AGGTAATACATACCCGTTTTTAAACCAGTTTTCCACGCGTACATGTGCATAGACGAAAGT 104424 |||||||||||||||||||| | || |||||||| ||||| | |||||| ||||| || Sbjct 72108 AGGTAATACATACCCGTTTTAAGCCCCGTTTTCCAGGCGTAGAAGTGCATGGACGAGAGC 72049 Query 104425 TTTGAAATTGTTGGACTCTCGACGAATAAGTTCA--TACTTTGACTTTGGTCTATATACA 104482 || | || | ||| || ||| | | |||| ||| ||| ||||| ||| || Sbjct 72048 TTGGCAAACGAGGGATTCATCACGTACAGATTCAGCGACTGCGAC--TGGTCGATAAACG 71991 Query 104483 CACCTCTATCCGCCGCCATATCGATGATTGTTTTTTGACTCATTTCCCATACGGTTTT 104540 ||| || | || |||| ||||||| |||| | || | || ||||| |||||||| Sbjct 71990 GACCCCTTGCGGCAGCCAAGTCGATGAGTGTTCTCTGCTTAATCTCCCACACGGTTTT 71933 >seq35 Length=138074 Score = 145 bits (160), Expect = 1e-29 Identities = 206/289 (71%), Gaps = 3/289 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||||||||| ||||| ||||| || || |||||| |||||||| | || Sbjct 47133 TCGAAATCTTCACCGCCCAAATGTGTGTCTCCATTGGTCGCGACCACTTCAAAAACTCCG 47074 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||| | | | || |||||||| || |||||||||| || | | || | | Sbjct 47073 TTGTCAATAGTAAGGAGAGATACATCAAAAGTGCCACCACCCAAATCGTACACTAGAATG 47014 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | || || || ||||| || | ||||| ||||| |||||||| || ||||| Sbjct 47013 TTCTTCTCACCGCCT---TTCTTGTCCAACCCGTAAGCGATTGCCGCCGCTGTCGGTTCG 46957 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 |||||||| || | | |||||| || | || ||| | || ||||| ||||| ||||| Sbjct 46956 TTAATAATTCGGATAACGTTCAGCCCCGAGATGGTTCCAGCGTCTTTGGTCGCCTGTCGC 46897 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTT 7745 || | ||||| ||||| ||||| || || || || |||| | | |||| Sbjct 46896 TGTGCGTCGTTGAAGTACGCCGGTACTGTCACCACTGCGTTCTTTACTT 46848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635129076533960