Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq9 132 6e-26 >seq9 Length=285593 Score = 132 bits (146), Expect = 6e-26 Identities = 248/363 (68%), Gaps = 6/363 (2%) Strand=Plus/Minus Query 106279 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC 106338 ||| || | |||||||| ||| | ||||| |||||||| ||||| || ||||| | || Sbjct 71389 ATCGGCCAAACCTTGAATACCGATGCCAATGGGTCTGTGGCGCATGTTGGACTTCCTCGT 71330 Query 106339 AGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTT 106398 | |||||| || ||| |||||||||||| || ||| | ||| | ||||| | | Sbjct 71329 GGCCTCAACAGGGTAATGATTTCTGTCAATCACCTTGTTCAAGTTTCTCGTAACTACATG 71270 Query 106399 TGTGATTTCATG---AAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTT 106455 |||| || | |||||||| || ||||| | || | || || |||| |||| Sbjct 71269 GGTGA---CACGTCTCAGTTTTTCGTAGTCAAACGATCGGCTATCAAGATCGACAAACTT 71213 Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 ||| | || | || || | ||||| ||||| ||||||| | || ||||| | Sbjct 71212 TGGCAAGGACAACGAAGCGAGGTTGCATACAGCTATCTCATCAGGTGCGGTATACTCCAC 71153 Query 106516 AATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTT 106575 ||||| || || | ||| | ||| || |||||||| || ||||| || ||| | Sbjct 71152 TATTTCAGTGCAGAGATTGCTTGATTGAATAGTACCCAAATTTTTCTGGTTGCTTTTTCT 71093 Query 106576 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAAT 106635 ||||||||| |||||||| | | | | ||||| || || || | || || | ||||| Sbjct 71092 GTTGCACGCGTCCTTGTAAACTAGGAATGGCGTTCCAGTTTCAATTTGGGATTGTAGAAT 71033 Query 106636 TGC 106638 || Sbjct 71032 GGC 71030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977341237560