Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9 233 2e-56 >seq9 Length=285593 Score = 233 bits (258), Expect = 2e-56 Identities = 614/924 (66%), Gaps = 22/924 (2%) Strand=Plus/Minus Query 47886 GATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACAT 47945 || || || || |||||||||| ||||| || ||||| | | |||||||| || Sbjct 71199 GAAGCGAGGTTGCATACAGCTATCTCATCAGGTGCGGTATACTCCACTATTTCAGTGCAG 71140 Query 47946 AGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCC 48005 ||||| | ||| |||||||||||||||| || || | |||| || |||||| Sbjct 71139 AGATTGCTTGATTGAATAGTACCCAAATTTTTCTGGTTGCTTTTTCTGTTGCACGCGTCC 71080 Query 48006 TTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCA-AAC 48064 ||||||| | || || ||||||||||| || || |||| | || | ||| ||| Sbjct 71079 TTGTAAACTAGGAATGGCGTTCCAGTTTCAATTTGGGATTGTAGAATGGCGAACCATAAC 71020 Query 48065 AGT----CCTAGC-CTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATAT 48119 | ||| | || | | ||| | | ||| ||| |||| | ||| | || Sbjct 71019 GATTGTGCCTTGATCTGTTTGACATAACGACCTTGATTCTCATACT-----TTA-TGTAC 70966 Query 48120 AACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATC 48179 | || ||||| || | ||||| | || | ||||||||| | ||||||||| Sbjct 70965 AGCTCTTCAAACTCTTTTCCATAAGAGGTGTCAAGTCCAGGACATAAGTGAGGACACATT 70906 Query 48180 AATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCT 48239 || |||| | ||||| || |||||| ||| |||| || | |||||| |||||| Sbjct 70905 AAACTCCAAGCACCATCAGATTGTACTCTTTCCATGAATAGGTCGGATATCCATAGAGCT 70846 Query 48240 ATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAG 48299 | |||||| || || | ||| ||||||| || ||| ||| | ||||||| |||| Sbjct 70845 AGAAATAAGTCTCTTGCTCTCTGTTCTTCTTTACCATGGTTCTTCCGGAGTTCAATAAAG 70786 Query 48300 TCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATT-ACACCTGGTCGTTTATT 48358 || | | ||||||||||||||| || || || ||||| | | | ||| | ||||| Sbjct 70785 TCGAACACATCAGCATGCCATGGCTCCAAGTAGATTGCGAATGAGCCCTTG-CGTTTGCC 70727 Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||||||||| |||| ||| | ||| | || ||||||| | |||||| | || || Sbjct 70726 ACCTCCTTGGTCTACATAGCGAGCACAGTCATTGAAAACTCTGAGCATTGGAATGATTCC 70667 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 || | | | ||||||||||||| ||| ||| |||| |||| || | ||| || || Sbjct 70666 GTTCGCTCTTCCATTGGTTCCCGCAATGTAAGTTCCTGTAGCCCTGACTTTATGAACTGC 70607 Query 48479 AATACCTATACCACCTGCCATTTTAGAT-ATTAGAGCACACCGTTTAAGGGTATCATAAA 48537 || || ||||| |||| ||| || | | || || || || ||| | || ||| | | Sbjct 70606 AAGCCCAATACCTCCTG-CATATTTGCTGATGAGTGCGCATGATTTTAATGTCTCAAATA 70548 Query 48538 TTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG--ATG 48595 | ||| | |||||||| ||| ||| | | || ||||| ||||| || || || Sbjct 70547 TACCTGCGATACTATCCTCTGCCATTTGCAGAAGGAAACAGGAGGACATCTGAGGTCTTG 70488 Query 48596 ACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAA 48655 | || |||| ||| || || || || | |||||| |||| | || | || | | Sbjct 70487 CC--GTCCCTGCATTGAACAAGGTAGGGGTAGCATGAGTAAAGAACTTTTGTGTCATTAG 70430 Query 48656 TTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCAT 48715 | || | || ||||| || | |||| ||| ||||| || ||| | || Sbjct 70429 CTCGTAACTCTCTCTAACACTTTCCAAGTCCCCACAATGGATACCACAAGCTACCCTCAA 70370 Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTA-TTTATTTTCAAAAGATATGATTTTT 48774 ||||||| ||| |||||||| |||| || | || ||| | || | ||| | ||| Sbjct 70369 GAACATATGTTGGGGTCTTTCTACAA-CACGTGAGTTGATTCTTAATAAGTATCCTCTTT 70311 Query 48775 CCAATGTTTTAAAACCAAAATAGT 48798 | ||||| || || ||||||||| Sbjct 70310 CTAATGTCTTGAACGCAAAATAGT 70287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105504637160