Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5 131 1e-24 seq18 111 1e-18 seq19 91.5 1e-12 >seq5 Length=374238 Score = 131 bits (144), Expect = 1e-24 Identities = 504/783 (64%), Gaps = 58/783 (7%) Strand=Plus/Plus Query 368400 ACATAGCTATCCACATTGTTATCGAACAGATACACCACTATTATACCGTGTTTCAACTGG 368459 |||||| ||||||||||||||||| | || ||||| || ||||| | | | | Sbjct 234132 ACATAGTTATCCACATTGTTATCGTTCGGAAACACCTTTAATATACAAAGCTGTACCATC 234191 Query 368460 TTGGTTTTTAAATGCATCCGATGAAACATTTAGAGAAAAAATGTTAAATAATAATTCTAA 368519 |||||| | |||| ||||| ||| | ||| ||| | | | ||||||| | Sbjct 234192 ATGGTTTGTGAATGT------TGAAAGATTAAAAGACAAATTAATTATTAATAATCAAGA 234245 Query 368520 AATAAATTGGATGCCATCTAATATTGGAACAAAACATTTTGATAATTGGCTCCAAAATTC 368579 || | |||||| ||| | |||| | ||||| ||| |||||||||| | | | Sbjct 234246 AACACGTTGGATACCACCACATATACAAGTAAAACGTTTCCATAATTGGCTTGCAGA--C 234303 Query 368580 AGTTGA--TTGGTGTATTTCAAGAAGTAGGTTTTGGGGAACTCCAATTCCAGTATGGAAA 368637 ||| || ||||||| | | | | | ||||||||||| || || ||| | ||| | Sbjct 234304 AGTCGAGATTGGTGTGTGAGTCGTAATCGATTTTGGGGAACACCTATACCACTTTGGGTA 234363 Query 368638 TCTGATGATGGTGAAGAAATTGTTTGTATAGGTTCAAT--TAAAGAATTGCAAGAATTAT 368695 || || |||||| || || |||||| || | | ||||| | ||| || Sbjct 234364 TCAGAAGATGGTAAAATTATAAAGTGTATAAC--CAGTCGTGAAGAACTTGAAGCATGTA 234421 Query 368696 CTGGTGTGCAAAAT--ATTAGTGATTTACATATTGATAAAATTGATCACATTAAAATTCC 368753 | || ||||| || | |||| |||||| | ||||| || | | || || Sbjct 234422 CAGG-----AAAATGTATAAATGATCTACATAGACACTTTATTGACCAATTGACGATACC 234476 Query 368754 --ATCA----AAGAAAG-----GAAAAGGTTT----ATTGTCTCGAGTTGAAGGAGTTTT 368798 ||| || || | || ||| | |||| ||| || || | |||||| Sbjct 234477 TGATCCTCGTAATAATGAGACTGAGAAGTATCCACCATTGCATCGTGTGGACGAAGTTTT 234536 Query 368799 GGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATTTGATAA 368858 ||||| ||||||||||||||||| |||||||||||| | ||||||||||||||| || Sbjct 234537 CGATTGTTGGTTTGAATCAGGTTCGATGCCTTATGGTTCTAAACATTATCCATTTGAAAA 234596 Query 368859 CGCAAAATACTTTGATAA-TGATAAAGATTATGTGGCTGATTTTGTAACAGAATCAATTG 368917 | | | || || || | || | || || ||||| |||| | | | Sbjct 234597 TAAAGAGAATTTCGAAAAGTCATTCCCA-------GCGGACTTTGTTGGAGAAGGATTAG 234649 Query 368918 ATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTTCGATAAAC 368977 ||||||| ||||| ||||||||||| |||| |||| | || | || | | Sbjct 234650 ATCAAACCCGTGGATGGTTTTATACTCTATCAGTAATCAGTTGTGCATTATTTGGTTCTG 234709 Query 368978 CGGCTTTTAAAAATGTAATAGTAACTGGTATTGTTAAT-GCATCTGATGGTCAAAAGATG 369036 | ||||||| ||| |||| |||| ||| ||| || | ||| |||||| | |||||| Sbjct 234710 CACCTTTTAAGAATTTAATTGTAAATGG-ATTAGTATTAGCACAAGATGGTAAGAAGATG 234768 Query 369037 TCAAAAAGTAAGGGT------AATTATTCCGATCCTAATATTTTAATTGATAAATTTGGT 369090 |||||| || |||||| | || || || || ||||| |||| Sbjct 234769 ------AGTAAGCGTTTAAAGAATTATCCACCACCAGATGAAATATTTAGTAAATATGGT 234822 Query 369091 GCTGATACTTTGAGATTATACCTATTGTCATCACCTGTAGTAAAAGCAGAATCTATTAAA 369150 |||||| || | |||||||| || | ||||||||| ||||||| ||||| ||| | Sbjct 234823 GCTGATGCTCTTAGATTATATCTTATTAATTCACCTGTATTAAAAGCTGAATCACTTAGA 234882 Query 369151 TTT 369153 ||| Sbjct 234883 TTT 234885 >seq18 Length=195987 Score = 111 bits (122), Expect = 1e-18 Identities = 324/488 (66%), Gaps = 12/488 (2%) Strand=Plus/Plus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || ||||||||||| || ||||| |||||||||||||| || ||||| || | || || Sbjct 171758 GTCGAAATTATTGCAAACGATCAGGGTAACAGAACTACCCCTTCTTACGTGGCCTTTACT 171817 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || | || | ||| ||||||| || || || | |||| | || || | || Sbjct 171818 GACTCGGAGCGTTTGATTGGTGACGCGGCGAAGAACCAAGTGGCGAAGAACCCGGCGAAC 171877 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGG-AAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 ||| | ||||| ||||| ||||| ||||| |||||| || ||| |||| ||| | Sbjct 171878 ACTGTGTTTGACGCTAAGCGTTTGATTGGTCGGAAGTTCCAA-GATGATGCTGTACAGTC 171936 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTG----TTAATGTTTCTGGAAAACCTTATATTG 550286 || |||||||| |||||||| ||| || | | | |||| || ||| |||| Sbjct 171937 TGACATGAAGCACTGGCCTTT-CAAGGTGAAGCCTGACCCTACTGGCAAGCCTGTGATTG 171995 Query 550287 AAGCTACTCATGAAGGATCTGTTAAACAATTTTCAC-CAGAACAAATTTCATCTATGGTT 550345 | | || | ||| | | || | || ||| | || | ||||| | ||||| Sbjct 171996 AGGTGCAGTATCAGGGAGC-GACGAAGACGTTCCACGCCGAGGAGATTTCGGCCATGGTG 172054 Query 550346 TTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGT 550404 || || || ||||| | || || |||| | || | ||| || ||| | || || Sbjct 172055 TTGATTAAGATGAAGGAGACCGCTGAGGCTTACCTCGG-AACGAAGGTGACGCAGGCTGT 172113 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464 || || || || || || || || || || || || || || || || ||||| || Sbjct 172114 CATTACCGTCCCTGCGTACTTCAACGATTCTCAGCGCCAGGCAACCAAGGATGCCGGCGC 172173 Query 550465 TATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524 |||||||| || | || || || || ||||| || || |||||||| || | ||||| Sbjct 172174 CATTGCTGGTCTCCAGGTGCTCCGCATCATCAACGAGCCGACTGCTGCAGCTATCGCATA 172233 Query 550525 TGGACTTG 550532 || |||| Sbjct 172234 CGG-CTTG 172240 >seq19 Length=197207 Score = 91.5 bits (100), Expect = 1e-12 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 563259 ACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGA 563318 |||||| ||||| || || || ||||| || ||| |||||||| | | ||||| Sbjct 102031 ACGGAGCACAAGGTGCAGTGTGCTTTCCTTCTGAATGTTGTAATCGGACAACGTTCTACC 102090 Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 || || || ||||| || || ||||| || | || ||||||||||| || ||||| || Sbjct 102091 TTCATCGAGCTGTTTGCCCGCGAAAATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTT 102150 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAA 563437 || ||||| || || || | ||||| || || ||| | | || ||| || |||| Sbjct 102151 GTCCTGAATCTTGGCCTTAACAACGTCAATCGTGTCCGTG-GGCTCCACTTCCAGGGTAA 102209 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || |||||||| | || || || || || ||||| Sbjct 102210 TCGTCTTACCAGTTAACGTCTTGACAAAGATCTGCAT 102246 Score = 87.8 bits (96), Expect = 1e-11 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 563259 ACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGA 563318 ||| || ||||| || | ||||||||||| ||||| ||||| | || || || Sbjct 102259 ACGCAGCACAAGGTGCAACGTACTTTCTTTCTGGATATTATAATCCGATAACGTCCTACC 102318 Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 || || | ||| || || |||||||| || | |||||||||||||| || ||||| || Sbjct 102319 CTCCTCCAATTGCTTACCAGCAAAAATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTT 102378 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAA 563437 || ||||| || || || | |||| | ||| || | | || || ||||||| Sbjct 102379 GTCATGAATCTTAGCCTTCACCGTATCAACAGAATCCGT-AGGTTCCACCTCCAGAGTAA 102437 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||| | ||| ||||| || || ||||| Sbjct 102438 TCGTCTTCCCAGTTAAAGTCTTAACAAAGATCTGCAT 102474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029271197164810