Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq19 114 8e-20 seq18 96.9 2e-14 >seq19 Length=197207 Score = 114 bits (126), Expect = 8e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 480557 ACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTT 480616 |||||| ||||| || ||||| ||||| || || || ||||| | | ||||| Sbjct 102031 ACGGAGCACAAGGTGCAGTGTGCTTTCCTTCTGAATGTTGTAATCGGACAACGTTCTACC 102090 Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 || || || || || || || ||||| ||||| |||||||||||||| || |||||||| Sbjct 102091 TTCATCGAGCTGTTTGCCCGCGAAAATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTT 102150 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| |||||||| || ||| | ||||| || || ||| | ||| |||||||| Sbjct 102151 GTCCTGAATCTTGGCCTTAACAACGTCAATCGTGTCCGTGGGCTCCACTTCCAGGGTAAT 102210 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || | ||||| || || || || Sbjct 102211 CGTCTTACCAGTTAACGTCTTGACAAAGATCTG 102243 Score = 114 bits (126), Expect = 8e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 480557 ACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTT 480616 ||| || ||||| || | ||||||||||| | ||||||||| | || || || Sbjct 102259 ACGCAGCACAAGGTGCAACGTACTTTCTTTCTGGATATTATAATCCGATAACGTCCTACC 102318 Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 || || | |||||| ||||||||||| ||||| || ||||||||||| || |||||||| Sbjct 102319 CTCCTCCAATTGCTTACCAGCAAAAATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTT 102378 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| |||||||| || || | |||| || ||| || || || || ||||| Sbjct 102379 GTCATGAATCTTAGCCTTCACCGTATCAACAGAATCCGTAGGTTCCACCTCCAGAGTAAT 102438 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || | ||||||||| || || || Sbjct 102439 CGTCTTCCCAGTTAAAGTCTTAACAAAGATCTG 102471 Score = 87.8 bits (96), Expect = 1e-11 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 480564 ACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCA 480623 || ||||||| || |||||||| | || ||||| |||| || | || || Sbjct 101810 ACGAGATGAATAGTGCTTTCTTTCTGGATGTTGTAATCGGCTAATGTCCGACCCTCATCC 101869 Query 480624 AGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGA 480683 |||||||| ||||| ||||| ||||| ||||| || || ||||| ||||| ||||||||| Sbjct 101870 AGTTGCTTACCAGCGAAAATCAGACGCTGTTGGTCCGGGGGAATACCTTCTTTGTCTTGA 101929 Query 480684 ATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTA 480743 ||||| || || | || | || || || || ||| || ||||| || || Sbjct 101930 ATCTTGGCCTTAACGGTATCGACAGAGTCCGTTGGTTCGACTTCGAGAGTAATCGTCTTG 101989 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 || || | || || ||||| ||||| Sbjct 101990 CCAGTCAAGGTTTTGACGAAGATTTG 102015 >seq18 Length=195987 Score = 96.9 bits (106), Expect = 2e-14 Identities = 182/268 (68%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| | || |||||||| || || || ||| ||||| || || || | || Sbjct 171698 GCAGTAGGCATTGATTTGGGTACGACCTACTCCTGTGTGGCCGTGGTGCGACCTGAGGGT 171757 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||| || || || ||||| ||||| || || || || || | |||||| Sbjct 171758 GTCGAAATTATTGCAAACGATCAGGGTAACAGAACTACCCCTTCTTACGTGGCCTTTACT 171817 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || | || | | | ||||| || || || || | |||| || || || | || Sbjct 171818 GACTCGGAGCGTTTGATTGGTGACGCGGCGAAGAACCAAGTGGCGAAGAACCCGGCGAAC 171877 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 ||| | ||||| ||||| | ||||||||||| || || | ||| |||| || ||| Sbjct 171878 ACTGTGTTTGACGCTAAGCGTTTGATTGGTCGGAAGTTCCAAGATGATGCTGTACAGTCT 171937 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGA 474596 || ||| || |||||||| ||||||| Sbjct 171938 GACATGAAGCACTGGCCTTTCAAGGTGA 171965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268159082314412