Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq9 152 6e-32 seq274 86.0 7e-12 >seq9 Length=285593 Score = 152 bits (168), Expect = 6e-32 Identities = 612/951 (64%), Gaps = 31/951 (3%) Strand=Plus/Plus Query 75310 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTT 75369 ||| || || || ||| | |||||||| || || ||||||| ||||||||| || || Sbjct 70453 TCATGCTACCCCTACCTTGTTCAATGCAGGGACGGCAAGACCTCAGATGTCCTCCTGTTT 70512 Query 75370 CCTTATCGCCAA---CAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTG 75426 |||| | || || || ||||| ||| ||||| | || || | | || Sbjct 70513 CCTTCT-GCAAATGGCA--GAGGATAGTATCGCAGGTATATTTGAGACATTAAAATCATG 70569 Query 75427 TGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGAT-GCACATCCATGATGTGAGAGCCA 75485 || | ||| || | || || ||||||||| | ||| || || | || || || | Sbjct 70570 CGCACTCATCAGCAAATATGCAGGAGGTATTGGGCTTGCAGTTC-ATAAAGTCAGGGCTA 70628 Query 75486 ATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCG 75545 | || ||| ||| || ||||| | | | || || ||||||||||| | | Sbjct 70629 CAGGAACTTACATTGCGGGAACCAATGGAAGAGCGAACGGAATCATTCCAATGCTCAGAG 70688 Query 75546 TATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCG 75602 | || || | | || ||||||||| | |||| || | |||||||| || ||| Sbjct 70689 TTTTCAATGACTGTGCTCGCTATGTAGACCAAGGAGGTGGCAAACGCAAGGGCTCATTCG 70748 Query 75603 CGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACC 75662 | |||||||||| ||||||||||| ||| | | || || |||| | || |||| Sbjct 70749 CAATCTACTTGGAGCCATGGCATGCTGATGTGTTCGACTTTATTGAACTCCGGAAGAACC 70808 Query 75663 AAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTT 75722 | ||| | ||||| | ||||| | ||| | | || ||||| | ||||| | Sbjct 70809 ATGGTAAAGAAGAACAGAGAGCAAGAGACTTATTTCTAGCTCTATGGATATCCGACCTAT 70868 Query 75723 TCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAG 75782 ||||| | | || | | |||| ||| | | | ||||| || || | Sbjct 70869 TCATGGAAAGAGTACAATCTGATGGTGCTTGGAGTTTAATGTGTCCTCACTTATGTCCTG 70928 Query 75783 GTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGG 75842 | || | | | || | |||||||||| || |||| ||||||||| | | | Sbjct 70929 GACTTGACACCTCTTATGGAAAAGAGTTTGAAGAGCTGTACATAAAGTATGAGAATCAAG 70988 Query 75843 GTAGA---GCCAATGCGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCA 75898 || | | ||| || | | || | | ||| ||| || ||||| |||| Sbjct 70989 GTCGTTATGTCAA----ACAGATCAAGGCACAATCGTTATGGTTCGCCATTCTACAATCC 71044 Query 75899 CAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAAC 75958 || | || |||||||| |||| | |||||||||| || || |||| || || ||| Sbjct 71045 CAAATTGAAACTGGAACGCCATTCCTAGTTTACAAGGACGCGTGCAACAGAAAAAGCAAC 71104 Query 75959 CAAAAGAATTTGGGAACAAT-CAAG--AGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 || || |||||||| || || ||| ||| ||||| ||||| ||||| | ||||| Sbjct 71105 CAGAAAAATTTGGGTACTATTCAATCAAGC---AATCTCTGCACTGAAATAGTGGAGTAT 71161 Query 76016 ACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTC 76075 || | ||||||| ||||| ||||| | || || | || | ||||||| |||| Sbjct 71162 ACCGCACCTGATGAGATAGCTGTATGCAACCTCGCTTCGTTGTCCTTGCCAAAGTTTGTC 71221 Query 76076 AATGAAGAGACTCGCACTTTTGATTATGAAAAACTT---CATGAAATCACAAAGATTGTT 76132 || || | || | ||||| || |||||||| | || |||| | | ||| Sbjct 71222 GATCTTGATAGCCGATCGTTTGACTACGAAAAACTGAGACGTG---TCACCCATGTAGTT 71278 Query 76133 ACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG 76192 || | ||| | ||| || |||||||||||| ||| || |||||| | || | ||| Sbjct 71279 ACGAGAAACTTGAACAAGGTGATTGACAGAAATCATTACCCTGTTGAGGCCACGAGGAAG 71338 Query 76193 TCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGAT 76243 || || ||||| |||||||| ||||| | ||| |||||||| | || ||| Sbjct 71339 TCCAACATGCGCCACAGACCCATTGGCATCGGTATTCAAGGTTTGGCCGAT 71389 >seq274 Length=342631 Score = 86.0 bits (94), Expect = 7e-12 Identities = 182/269 (68%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 175229 AAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCC 175288 ||||| ||||||| ||||| || || || |||| || | || || |||| | Sbjct 329188 AAGAGTTTGTGGACTTTCTAAAACACCCGGAGAAGTACACGAGTTTAGGAGCGCAGATTC 329247 Query 175289 CCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCA 175348 || |||||| | || | |||| ||| |||||||| |||||| | | || || || | Sbjct 329248 CCAAAGGCGCGTTGCTGGTGGGTCCGCCGGGTACGGGTAAGACCTTGTTAGCGCGGGCTA 329307 Query 175349 TCGCGGGTGAATCAAATGT-CCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATG 175407 | || ||||| || ||| ||| || | || ||| | | ||||| | |||||| Sbjct 329308 TTGCAGGTGAGGCAGGTGTGCCCTTTTACTCAAC-CTCGGGTTCGGACTTTATTGAGATG 329366 Query 175408 TTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAA 175467 ||||| || || ||||| |||| |||| || | |||| | || ||| ||||| Sbjct 329367 TTTGTGGGAGTTGGTGCTTCAAGGATTCGTGACTTGTTTGCTAAGGCGCGCAAAAATGCG 329426 Query 175468 CCATGTATTGTCTTCATTGATGAGATTGA 175496 ||| |||||| || || || |||||||| Sbjct 329427 CCAGCTATTGTGTTTATCGACGAGATTGA 329455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566102610720