Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq18 325 5e-84 seq35 145 1e-29 seq1 138 1e-27 seq19 125 9e-24 >seq18 Length=195987 Score = 325 bits (360), Expect = 5e-84 Identities = 1042/1602 (65%), Gaps = 22/1602 (1%) Strand=Plus/Plus Query 195287 ATAATGTCTCAAGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGG 195346 |||| |||| | || | || || ||||| || || || ||||| ||||| | || | Sbjct 171687 ATAA-GTCTTACGCAGTAGGCATTGATTTGGGTACGACCTACTCCTGTGTGGCCGTGGTG 171745 Query 195347 CAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTAC 195406 | | ||| |||| || ||||| | || || || || ||| | || || || || ||| Sbjct 171746 CGACCTGAGGGTGTCGAAATTATTGCAAACGATCAGGGTAACAGAACTACCCCTTCTTAC 171805 Query 195407 GTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATG 195466 || |||||||| || || ||| | |||| || || || || || || || | | Sbjct 171806 GTGGCCTTTACTGACTCGGAGCGTTTGATTGGTGACGCGGCGAAGAACCAAGTGGCGAAG 171865 Query 195467 AACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAG 195526 ||||| || ||||| |||||||| |||||| | |||||||| ||||| ||| | Sbjct 171866 AACCCGGCGAACACTGTGTTTGACGCTAAGCGTTTGATTGGTCGGAAGTTCCAAGATGAT 171925 Query 195527 AAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGG-CTGATAA 195585 || || || || ||| ||||| ||| | ||| || || | ||| || Sbjct 171926 GCTGTACAGTCTGACATGAAGCACTGGCCTT-TCAAGGTGAAGCCTGACCCTACTGGCAA 171984 Query 195586 GCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTC-CCGAAGAAATTT 195644 |||| ||||| | || | | ||| || | || ||| | || | | |||| || |||| Sbjct 171985 GCCTGTGATTGAGGTGCAGTATCAGGGAGCGACGAAG-ACGTTCCACGCCGAGGAGATTT 172043 Query 195645 CGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGA 195704 || | |||||||||||||||||||||||||| || || ||| | | || | | |||| Sbjct 172044 CGGCCATGGTGTTGATTAAGATGAAGGAGACCGCTGAGGCTTACCTCGGAACGAAGGTGA 172103 Query 195705 AAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGG 195764 | || || | || || ||||| ||||||| ||||| || || ||||| || |||| Sbjct 172104 CGCAGGCTGTCATTACCGTCCCTGCGTACTTCAACGATTCTCAGCGCCAGGCAACCAAGG 172163 Query 195765 ACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTG 195824 | || | || ||||| ||||| | || | || ||||| || || || || || | Sbjct 172164 ATGCCGGCGCCATTGCTGGTCTCCAGGTGCTCCGCATCATCAACGAGCCGACTGCTGCAG 172223 Query 195825 CAATTGCTTATGGTCTGGACAAGAA---CAAGGACGAAGATAAAAATGTATTGATCTTTG 195881 | || || || || |||||||||| | | | | || || ||||| | ||||| | Sbjct 172224 CTATCGCATACGGCTTGGACAAGAAGGCCGACGCGGGCGAGAAGAATGTGCTCATCTTCG 172283 Query 195882 ATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAG 195941 | |||||||| || || || |||||||| || |||| ||||| | || || ||||||| Sbjct 172284 ACCTCGGTGGCGGCACCTTCGATGTCTCTCTCCTCACCATTGAGGAAGGCATCTTCGAAG 172343 Query 195942 TAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTC- 196000 | ||||| || |||||||| || || | || ||||| |||||||| || ||| || Sbjct 172344 TCAAGGCCACGGCTGGTGACACGCACTTGGGCGGTGAGGATTTCGACAACCGCCTTGTCG 172403 Query 196001 CGT-CATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATC---- 196055 || | ||| | | || ||| || | | |||| || ||| | | | Sbjct 172404 AGTACTGTTGCC--AGGACTTCAAGCGCAGACACAAGAGCGA----CCTGAACAGCTCCG 172457 Query 196056 CTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTA 196115 | | || || || || || | || || || || || ||||| |||||||| ||| Sbjct 172458 CCCGTGCACTGCGACGCCTCCGTACCGCCTGCGAGCGCGCCAAGAGAACTCTCAGTTCCG 172517 Query 196116 CGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTA 196175 | | || | |||| || |||||| | || || || || |||| || |||| Sbjct 172518 CCACCCAGGCCTCCATTGAAATCGATTCGCTCTTCGAGGGTATCGACTACTCAACAAACG 172577 Query 196176 TTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTG 196235 | |||||||| || || ||||| | ||| || | || | |||||| |||||||| | Sbjct 172578 TCACCCGTGCTCGGTTCGAAGACCTGAACATGGACTACTTCAAGAAGTGCATGGAACCCG 172637 Query 196236 TTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTG 196295 | || | || |||| ||||| ||| || || ||| | ||||||||| | | Sbjct 172638 TCGACAAGGTCCTTCAGGACGCCAAGTGCGACAAACGCTCGGTGCACGAAATTGTCTTGG 172697 Query 196296 TGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATA 196355 | || || || ||||| || || ||| | || || || || | | |||| | Sbjct 172698 TTGGTGGTTCCACCCGAATCCCCAAGGTCCAGCAAATCATTACCGAGTACTTCGGCGGCA 172757 Query 196356 AAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGG 196415 | || | | |||||||| || || || || ||||| ||||| || || |||| Sbjct 172758 AGGAGCCCTGCCGCTCCATCAACCCCGACGAGGCTGTGGCTTACGGTGCCGCTGTGCAGG 172817 Query 196416 CTGCTATTCTCTCAGGTGTTGAC-AATAATAACGTCCAAGATCTTCTGCTACTTGATGTT 196474 ||| ||| || | | | ||| || | || |||| || | || || || ||||| Sbjct 172818 CTGGTATCCT-TACTGACTCGACTAACGAGAAGATCCAGGACATCCTTCTGCTGGATGTC 172876 Query 196475 GCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGG 196534 | || | || || ||||| ||||| || || ||||| | || | ||||| ||| Sbjct 172877 ACGCCTTTGTCGCTCGGTCTGGAAACGGCCGGCGGTGTGTTCACACGTCTCATTGACAGG 172936 Query 196535 AACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCA 196594 ||||| || || ||||| |||||| ||| ||| | || ||| |||| || || || Sbjct 172937 AACACTACCATCCCGACCAAGAAGACGCAAACCTTCACCACCTATGCCGACAACCAGCCC 172996 Query 196595 GGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTT 196654 ||||| | || || || | |||||| |||||| | | | | ||| | || || Sbjct 172997 GGTGTCCTAATCCAGGTCTTTGAAGGCGAACGCCAGCTCACTGTGCACAACAACCTCCTG 173056 Query 196655 GGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTT 196714 || | ||| | | || || || | || ||| | || || || || || | || Sbjct 173057 GGCAAGTTCCACCTCGATGGCATCCCCCCCGCTCCCCGCGGCGTGCCTCAAATCGAAGTC 173116 Query 196715 TGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGC 196774 |||||| | ||||| || || || || ||||| | || | || ||||| | ||| Sbjct 173117 ACTTTCGATGTGGACGCCAACGGCATCCTGAACGTGTCCGCCGTCGAAAAGGCCACGGGC 173176 Query 196775 AAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAA 196834 || | ||||| || ||||| || ||||| | |||||| || || || || Sbjct 173177 AAGAGCAACAAGATCACCATCACCAACGAGAAGGGCAGACTTTCTCAGTCCGACATCGAC 173236 Query 196835 CGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAG 196876 ||||| || || || || |||| || || || || ||| Sbjct 173237 AAAATGGTCCAGGAAGCCGAGAAGTTCAAGGCTGAGGATGAG 173278 >seq35 Length=138074 Score = 145 bits (160), Expect = 1e-29 Identities = 229/326 (70%), Gaps = 3/326 (1%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||| || ||| || | ||| |||| | || || | ||||| ||||| Sbjct 46811 AAGATGAAGACGATTGCAGAGGCGTTCTTGGGAACGGAAGTAAAGAACGCAGTGGTGACA 46870 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 ||||| || ||||||| || |||| ||||||||||| || ||||||| | || || Sbjct 46871 GTACCGGCGTACTTCAACGACGCACAGCGACAGGCGACCAAAGACGCTGGAACCATCTCG 46930 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || ||| | | ||||||| || ||||| |||||||| ||||| ||||| || || Sbjct 46931 GGGCTGAACGTTATCCGAATTATTAACGAACCGACAGCGGCGGCAATCGCTTACGGGTTG 46990 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 ||||||| |||| || || || || | | | | ||| | |||||||| || ||| Sbjct 46991 GACAAGA--AAGG-CGGTGAGAAGAACATTCTAGTGTACGATTTGGGTGGTGGCACTTTT 47047 Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961 ||||| || || || | |||||| || | || ||||| || || ||| || Sbjct 47048 GATGTATCTCTCCTTACTATTGACAACGGAGTTTTTGAAGTGGTCGCGACCAATGGAGAC 47107 Query 195962 ACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||| | || |||||||||||||| Sbjct 47108 ACACATTTGGGCGGTGAAGATTTCGA 47133 >seq1 Length=711979 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || || || || || || || | || || ||||||||| | | Sbjct 179784 ATGCAGATATTCGTCAAGACTCTGACGGGTAAGACCTTGACGCTGGAGGTTGAGCCCACC 179725 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | ||||| | | | || ||||||||||| ||||||||||||||||| || ||||| Sbjct 179724 GACTCTATCGAGACCGTTAAGGCCAAGATTCAGGATAAGGAAGGCATTCCTCCGGATCAA 179665 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || || || || ||||| | || ||||| || || || | ||||||||| Sbjct 179664 CAGCGCTTGATATTCGCCGGCAAACAATTGGATGATGGCCGCACTCTTTCGGATTACAAC 179605 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090 | || ||||||||||| | |||||||| || || || | || |||| Sbjct 179604 ATCCAGAAGGAGTCTACCATCCACCTTGTCCTCAGACTCAGAGGCGGTG 179556 >seq19 Length=197207 Score = 125 bits (138), Expect = 9e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || |||||| | ||||| || || || || ||||| || || | | Sbjct 102018 ATGCAAATCTTCGTCAAAACCTTGACTGGCAAGACGATTACTCTCGAAGTCGAACCAACG 101959 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | |||||| | | || |||||||||||||| || ||||| ||||| || || || Sbjct 101958 GACTCTGTCGATACCGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCGGACCAA 101899 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| |||||||| || || || || || || || | || ||||||||| Sbjct 101898 CAGCGTCTGATTTTCGCTGGTAAGCAACTGGATGAGGGTCGGACATTAGCCGATTACAAC 101839 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGCAACCGACGA 172100 | || || || ||| | || || || | || || | || |||| ||| | ||| Sbjct 101838 ATCCAGAAAGAAAGCACTATTCATCTCGTCTTGAGACTGAGAGGAGGTGAAACTGCCGA 101780 Score = 122 bits (134), Expect = 1e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || || | ||||| || || || ||||| || || ||| | | Sbjct 102246 ATGCAGATCTTTGTCAAGACGTTAACTGGTAAGACGATTACCCTGGAAGTGGAGCCCACG 102187 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || | || ||||||||||| || ||||||||||| || || ||||| Sbjct 102186 GACACGATTGACGTTGTTAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAA 102127 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| || || |||||||| || || || | || | | ||||||||| Sbjct 102126 CAGCGTCTGATTTTCGCGGGCAAACAGCTCGATGAAGGTAGAACGTTGTCCGATTACAAC 102067 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| ||||| || || |||||||| || Sbjct 102066 ATTCAGAAGGAAAGCACACTGCACCTTGTGCT 102035 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || || | ||||| || || || || || ||||| || | | Sbjct 102474 ATGCAGATCTTTGTTAAGACTTTAACTGGGAAGACGATTACTCTGGAGGTGGAACCTACG 102415 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || | | |||| | || || |||||||| || ||||||||||| || || |||||| Sbjct 102414 GATTCTGTTGATACGGTGAAGGCTAAGATTCATGACAAGGAAGGCATCCCTCCTGATCAG 102355 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || |||||||||||||| || | || || || | || | | ||||| || Sbjct 102354 CAGCGTCTGATTTTTGCTGGTAAGCAATTGGAGGAGGGTAGGACGTTATCGGATTATAAT 102295 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || || || ||| | |||||||| || Sbjct 102294 ATCCAGAAAGAAAGTACGTTGCACCTTGTGCT 102263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657858543281680