Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq23 120 4e-21 >seq23 Length=179919 Score = 120 bits (132), Expect = 4e-21 Identities = 187/267 (70%), Gaps = 9/267 (3%) Strand=Plus/Plus Query 869200 TTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCA 869259 ||||||||| |||| ||||||||||| ||| || || ||||||| ||| ||||||||||| Sbjct 161562 TTCGTTGCTGAAGGTGAGGCCGGGCAAGAGTCCACGTTTCTTGAACCAGAAGATGGCGCA 161621 Query 869260 GAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAA 869319 ||| ||| || || |||||||| ||||| ||| ||| || | || || |||||||| Sbjct 161622 AAAAGAGCCAGAAAATAAGATGCCTTCGACTGCGCAAAATCCTAGTAGTCGTTCGGCAAA 161681 Query 869320 GGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGA 869379 |||| || | || |||||||| | ||||| || ||||| | |||| | Sbjct 161682 AGTGT------TCTTGTGATTCATCCACTTGACTGCCCACTCCGCCTTCCGCTTCACGGC 161735 Query 869380 CGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGT---CCTTGACATA 869436 | ||| | | ||||||| || || | |||||| ||| || |||| | ||| Sbjct 161736 CTCCACGCTCTGGATGGCGTTGAACAGTCTGCTCTTTTCCGCCTCGTTCCCCTTTAAATA 161795 Query 869437 GGTGTCGATCAGGAGCGAATAGGTCTC 869463 || |||| | |||||| ||||| Sbjct 161796 CACATCTATCAATAACGAATAAGTCTC 161822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107100711663673