Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq19 134 1e-26 >seq19 Length=197207 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||| |||| ||||| || ||||| || ||||| || |||| Sbjct 102246 ATGCAGATCTTTGTCAAGACGTTAACTGGTAAGACGATTACCCTGGAAGTGGAGCCCACG 102187 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || || || ||||| || ||||| ||||| || ||||| |||||| Sbjct 102186 GACACGATTGACGTTGTTAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAA 102127 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || || || |||||||| || || |||| |||| ||||| ||| Sbjct 102126 CAGCGTCTGATTTTCGCGGGCAAACAGCTCGATGAAGGTAGAACGTTGTCCGATTACAAC 102067 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||| ||||| ||| | ||| | || ||| | || || Sbjct 102066 ATTCAGAAGGAAAGCACACTGCACCTTGTGCTCCGTTTGAGAGGTGG 102020 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| |||| || |||| || || || ||||| || || || ||| | || Sbjct 102475 GATGCAGATCTTTGTTAAGACTTTAACTGGGAAGACGATTACTCTGGAGGTGGAACCTAC 102416 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || | || || ||||| || ||||| || ||||| ||||| || ||||| ||||| Sbjct 102415 GGATTCTGTTGATACGGTGAAGGCTAAGATTCATGACAAGGAAGGCATCCCTCCTGATCA 102356 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||| ||||| || || || ||||||| || | | || |||||||| Sbjct 102355 GCAGCGTCTGATTTTTGCTGGTAAGCAATTGGAGGAGGGTAGGACGTTATCGGATTATAA 102296 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||| || | ||| | ||| |||| ||| | ||||| Sbjct 102295 TATCCAGAAAGAAAGTACGTTGCACCTTGTGCTGCGTTTGAGAGGAGG 102248 Score = 98.7 bits (108), Expect = 9e-16 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| | || || || || ||||| |||||||| ||| | || Sbjct 102018 ATGCAAATCTTCGTCAAAACCTTGACTGGCAAGACGATTACTCTCGAAGTCGAACCAACG 101959 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | || || || || || ||||| |||||||||||||| || || || || ||| Sbjct 101958 GACTCTGTCGATACCGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCGGACCAA 101899 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCAGATTATA 24881 || ||| |||| || || || || || ||||| || ||| || | | | ||||| | Sbjct 101898 CAGCGTCTGATTTTCGCTGGTAAGCAACTGGATGAGGGTCG-GACA-TTAGCCGATTACA 101841 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTG 24938 |||| || || ||| || | || | || ||| || || | ||||| | ||||| Sbjct 101840 ACATCCAGAAAGAAAGCACTATTCATCTCGTCTTGAGACTGAGAGGAGGTGAAACTG 101784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894962475320