Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq19 89.7 3e-13 >seq19 Length=197207 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| |||| |||| ||| || ||||| ||||| || ||||| ||||| || || | | Sbjct 101792 CCTCCTCTCAGTCTCAAGACGAGATGAATAGTGCTTTCTTTCTGGATGTTGTAATCGGCT 101851 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | || | || ||||||||||| || ||||| ||||| || || ||||| | || Sbjct 101852 AATGTCCGACCCTCATCCAGTTGCTTACCAGCGAAAATCAGACGCTGTTGGTCCGGGGGA 101911 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || ||||| | || || || |||| | | || || | | ||||| Sbjct 101912 ATACCTTCTTTGTCTTGAATCTTGGCCTTAACGGTATCGACAGAGTCCGTTGGTTCGACT 101971 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || || ||||| || || | ||| || || ||||| ||||| Sbjct 101972 TCGAGAGTAATCGTCTTGCCAGTCAAGGTTTTGACGAAGATTTGCAT 102018 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || ||||| | || || ||||| | ||||| |||||||||||||| || || | Sbjct 102018 TTCCACCTCTCAAACGGAGCACAAGGTGCAGTGTGCTTTCCTTCTGAATGTTGTAATCGG 102077 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | | | || || || || || || ||||| ||||| || || || || | | Sbjct 102078 ACAACGTTCTACCTTCATCGAGCTGTTTGCCCGCGAAAATCAGACGCTGTTGATCAGGAG 102137 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | || || || || | |||| || ||| ||| | Sbjct 102138 GGATGCCTTCCTTGTCCTGAATCTTGGCCTTAACAACGTCAATCGTGTCCGTGGGCTCCA 102197 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| || ||||| || || | ||||| |||||||||||||| Sbjct 102198 CTTCCAGGGTAATCGTCTTACCAGTTAACGTCTTGACAAAGATCTGCAT 102246 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| ||||| | ||| || ||||| | || || || ||||| || ||||| |||| Sbjct 102246 TTCCTCCTCTCAAACGCAGCACAAGGTGCAACGTACTTTCTTTCTGGATATTATAATCCG 102305 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 ||| | | | || |||| |||||| || || || ||||| || ||||| || | | Sbjct 102306 ATAACGTCCTACCCTCCTCCAATTGCTTACCAGCAAAAATCAGACGCTGCTGATCAGGAG 102365 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | || || || || | | | || || | | || | Sbjct 102366 GGATGCCTTCCTTGTCATGAATCTTAGCCTTCACCGTATCAACAGAATCCGTAGGTTCCA 102425 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || || ||||| || || | ||||| |||||||||||||| Sbjct 102426 CCTCCAGAGTAATCGTCTTCCCAGTTAAAGTCTTAACAAAGATCTGCAT 102474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325690938360311