Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq19 125 7e-24 >seq19 Length=197207 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| | | ||| || | |||||| || |||||| || |||||||||||| Sbjct 101792 CCTCCTCTCAGTCTCAAGACGAGATGAATAGTGCTTTCTTTCTGGATGTTGTAATCGGCT 101851 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | || || ||||| |||||||| | |||||||| || || || || || Sbjct 101852 AATGTCCGACCCTCATCCAGTTGCTTACCAGCGAAAATCAGACGCTGTTGGTCCGGGGGA 101911 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| | | | || | ||| | || || || | ||| || ||||| || Sbjct 101912 ATACCTTCTTTGTC-TTGAATCTTGGCCTTAACGGTATCGACAGAGTCCGTTGGTTCGAC 101970 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | ||| | ||||||||| ||||| ||||| ||||| |||||||| Sbjct 101971 TTCGAGAGTAATCGTCTTGCCAGTCAAGGTTTTGACGAAGATTTGCAT 102018 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 137220 TTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATA 137279 ||| || || |||||||||||| || || || || ||||| ||||| || || | Sbjct 102055 TTCCTTCTGAATGTTGTAATCGGACAACGTTCTACCTTCATCGAGCTGTTTGCCCGCGAA 102114 Query 137280 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG 137339 |||||||| || ||||| ||||| |||||||| ||||| ||| || || | Sbjct 102115 AATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTAACAAC 102174 Query 137340 TTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 137399 || | |||||| ||||| || ||||| | || | |||||| || || || || || || Sbjct 102175 GTCAATCGTGTCCGTGGGCTCCACTTCCAGGGTAATCGTCTTACCAGTTAACGTCTTGAC 102234 Query 137400 GAATATTTGCAT 137411 || || ||||| Sbjct 102235 AAAGATCTGCAT 102246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488541135910800