Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq19 179 7e-40 seq1 111 3e-19 >seq19 Length=197207 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||||||||| || | ||||| ||| ||||||||| ||||||||||| ||| Sbjct 102248 CCTCCTCTCAAACGCAGCACAAGGTGCAACGTACTTTCTTTCTGGATATTATAATCCGAT 102307 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | ||||| || || | ||| || |||||||| || || | || ||||| ||||| Sbjct 102308 AACGTCCTACCCTCCTCCAATTGCTTACCAGCAAAAATCAGACGCTGCTGATCAGGAGGG 102367 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || |||||||| || || || | |||| | ||| ||||||| || Sbjct 102368 ATGCCTTCCTTGTCATGAATCTTAGCCTTCACCGTATCAACAGAATCCGTAGGTTCCACC 102427 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| |||||||| || || || ||||| ||||| |||||||| Sbjct 102428 TCCAGAGTAATCGTCTTCCCAGTTAAAGTCTTAACAAAGATCTGCAT 102474 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||||||| || || | |||||| || ||| ||||| || || ||||| || Sbjct 102020 CCACCTCTCAAACGGAGCACAAGGTGCAGTGTGCTTTCCTTCTGAATGTTGTAATCGGAC 102079 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | ||||||| || || || ||||| || || || || || | |||||||| ||||| Sbjct 102080 AACGTTCTACCTTCATCGAGCTGTTTGCCCGCGAAAATCAGACGCTGTTGATCAGGAGGG 102139 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || |||||||| || || ||| |||||||| || | || || ||| Sbjct 102140 ATGCCTTCCTTGTCCTGAATCTTGGCCTTAACAACGTCAATCGTGTCCGTGGGCTCCACT 102199 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || |||||||| || || |||||||| ||||| ||||||||| Sbjct 102200 TCCAGGGTAATCGTCTTACCAGTTAACGTCTTGACAAAGATCTGCATT 102247 Score = 116 bits (128), Expect = 7e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||||| | || || | || | ||| ||||||||| || || ||||| | Sbjct 101791 ACCTCCTCTCAGTCTCAAGACGAGATGAATAGTGCTTTCTTTCTGGATGTTGTAATCGGC 101850 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | ||| || || ||||| || ||||| || || || | ||||| || || || Sbjct 101851 TAATGTCCGACCCTCATCCAGTTGCTTACCAGCGAAAATCAGACGCTGTTGGTCCGGGGG 101910 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| || ||||||||||| || || || | || | | || | ||||| || Sbjct 101911 AATACCTTCTTTGTCTTGAATCTTGGCCTTAACGGTATCGACAGAGTCCGTTGGTTCGAC 101970 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||| | ||| ||||||||||| ||||| || || || || || |||||| Sbjct 101971 TTCGAGAGTAATCGTCTTGCCAGTCAAGGTTTTGACGAAGATTTGCATT 102019 >seq1 Length=711979 Score = 111 bits (122), Expect = 3e-19 Identities = 165/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 82578 CACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAA 82637 |||| ||| ||||| | | || || | ||| | ||||| || ||||| || || ||| Sbjct 179553 CACC-ACCGCCTCTGAGTCTGAGGACAAGGTGGATGGTAGACTCCTTCTGGATGTTGTAA 179611 Query 82638 TCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCT 82697 || || ||| | | || || || | |||||| || || || || | | |||||||| Sbjct 179612 TCCGAAAGAGTGCGGCCATCATCCAATTGTTTGCCGGCGAATATCAAGCGCTGTTGATCC 179671 Query 82698 GGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT 82757 ||||| || ||||||||||| |||||||| || || || | || || | || | || Sbjct 179672 GGAGGAATGCCTTCCTTATCCTGAATCTTGGCCTTAACGGTCTCGATAGAGTCGGTGGGC 179731 Query 82758 TCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || |||| || | ||||| || |||| ||||| || ||||||||||| Sbjct 179732 TCAACCTCCAGCGTCAAGGTCTTACCCGTCAGAGTCTTGACGAATATCTGCAT 179784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981821300138991