Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq19 111 2e-19 seq1 95.1 1e-14 seq9 82.4 7e-11 >seq19 Length=197207 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 133470 TCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 || ||||| || ||||||||| || ||| || |||||||| ||||||||| || Sbjct 102056 TCCTTCTGAATGTTGTAATCGGACAACGTTCTACCTTCATCGAGCTGTTTGCCCGCGAAA 102115 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || ||||| || || |||||||||||||||||||| ||||| ||| | Sbjct 102116 ATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTAACAACG 102175 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 |||| |||||| ||||||||||| || | ||| | || || || || | || || || Sbjct 102176 TCAATCGTGTCCGTGGGCTCCACTTCCAGGGTAATCGTCTTACCAGTTAACGTCTTGACA 102235 Query 133650 AAAATCTGCAT 133660 || |||||||| Sbjct 102236 AAGATCTGCAT 102246 >seq1 Length=711979 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTG 133516 || ||||| ||||| ||||| || |||||||| | ||| | | | || || | || Sbjct 179582 TGGATGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCA-TCATCCAATTG 179640 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||||| ||| | || | ||||| || || ||||| ||||||||||| || ||||| Sbjct 179641 TTTGCCGGCGAATATCAAGCGCTGTTGATCCGGAGGAATGCCTTCCTTATCCTGAATCTT 179700 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | ||| | | |||||||||||| || || | || | ||| || || || Sbjct 179701 GGCCTTAACGGTCTCGATAGAGTCGGTGGGCTCAACCTCCAGCGTCAAGGTCTTACCCGT 179760 Query 133637 CAGAGTTTTTACGAAAATCTGCATGG 133662 |||||| || ||||| |||||||||| Sbjct 179761 CAGAGTCTTGACGAATATCTGCATGG 179786 >seq9 Length=285593 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 148827 GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCAC 148886 || || || ||||| || || ||||||| || ||| | ||||| || || || | ||| Sbjct 71199 GAAGCGAGGTTGCATACAGCTATCTCATCAGGTGCGGTATACTCCACTATTTCAGTGCAG 71140 Query 148887 AGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCC 148946 |||||||| ||| || |||| || || || ||||| || ||||||||||||||| Sbjct 71139 AGATTGCTTGATTGAATAGTACCCAAATTTTTCTGGTTGCTTTTTCTGTTGCACGCGTCC 71080 Query 148947 TTGTA 148951 ||||| Sbjct 71079 TTGTA 71075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417965945560