Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq9 136 9e-27 seq39 89.7 1e-12 seq14 89.7 1e-12 seq28 87.8 4e-12 >seq9 Length=285593 Score = 136 bits (150), Expect = 9e-27 Identities = 269/395 (68%), Gaps = 11/395 (3%) Strand=Plus/Plus Query 110689 TTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGA 110745 |||||||| | ||||| ||||| ||| ||| ||||| | ||||| ||| || Sbjct 70674 TTCCAATGCTCAGAGTTTTCAATGACTGTGCTCGCTATGTAGACCAAGGAGGTGGCAAAC 70733 Query 110746 GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAG 110805 | || |||||||| || ||||| | || || |||||| | ||| | || || || | | Sbjct 70734 GCAAGGGCTCATTCGCAATCTACTTGGAGCCATGGCATGCTGATGTGTTCGACTTTATTG 70793 Query 110806 AACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGT 110865 |||| || || || || || |||||||| |||||| | || |||||| || | | Sbjct 70794 AACTCCGGAAGAACCATGGTAAAGAAGAACAGAGAGCAAGAGACTTATTTCTAGCTCTAT 70853 Query 110866 GGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTC 110925 |||| || || |||||||| || | || ||| |||| ||| | | ||||||| Sbjct 70854 GGATATCCGACCTATTCATGGAAAGAGTACAATCTGATGGTGCTTGGAGTTTAATGTGTC 70913 Query 110926 CTCATCGTTCTCCTGGTCTATCTGA----TGTATATGGAAAAGAGTTTGAAGACCTTTAC 110981 |||| | |||||| || ||| | | |||||||||||||||||||| || ||| Sbjct 70914 CTCACTTATGTCCTGGACT---TGACACCTCT-TATGGAAAAGAGTTTGAAGAGCTGTAC 70969 Query 110982 GAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTC 111041 ||| ||||| || |||| | | |||||| || || ||| | |||||| Sbjct 70970 ATAAAGTATGAGAATCAAGGTCGTTATGTCAAACAGATCAAGGCACAATCGTTATGGTTC 71029 Query 111042 AAAATCCTTGAATCACAAGTTGAAACTGGAACTCC 111076 || || |||| ||| ||||||||||||| || Sbjct 71030 GCCATTCTACAATCCCAAATTGAAACTGGAACGCC 71064 >seq39 Length=115732 Score = 89.7 bits (98), Expect = 1e-12 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 ||||| | || || ||| ||||||||||| ||| |||| |||| || ||||| || Sbjct 2786 TTCAACCGTCAGCCTTCATTGCATAAAATGAGTATCATGGGTCATCGCGTGAAAGTTTTG 2845 Query 305396 TC-TGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGA 305454 | |||| | ||||| |||| || |||||| | | |||||||| || |||||||| Sbjct 2846 CCATGGAGT-ACATTCCGATGTAACTTAAGTGTAACTGCTCCTTATAACGCAGATTTTGA 2904 Query 305455 TGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||| || || |||||||||||| || | ||| Sbjct 2905 TGGGGACGAGATGAATATGCATTTAGCACAA 2935 >seq14 Length=232759 Score = 89.7 bits (98), Expect = 1e-12 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||| || |||| |||| || || |||||| |||| || || ||||||| ||| Sbjct 198451 GACATGTGCGTGACGGGGATTACGTCCTCTTCAATCGGCAGCCGTCGTTGCATAAGATGA 198392 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTATC-TGGATTGACATTTCGATTAAATGTAAGT 305425 ||| |||| ||| || || || |||||| | |||| ||||| || | ||| | ||| Sbjct 198391 GTATCATGGGTCACAAGGTTAAGGTATTACCGTGGAGC-ACATTCCGCTGCAATCTGAGT 198333 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCAT 305476 | || || || ||||| ||||||||||| ||||| |||||| ||||| Sbjct 198332 GTGACCACTCCATACAATGCCGATTTTGATGGCGATGAGATGAATTTGCAT 198282 >seq28 Length=166519 Score = 87.8 bits (96), Expect = 4e-12 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 305322 ATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATA 305381 ||||| ||| || || ||||| ||||||||||| ||| |||| ||| ||||| ||| Sbjct 47656 ATGATATGGTGCTATTTAATAGACAACCATCACTACATCGAATGAGTATTATGGCACATC 47715 Query 305382 AAGTCAAAGTATTAT---CTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTT 305438 | | || |||| ||||| ||| |||| || |||| ||| || | |||| Sbjct 47716 GCGC--ACGTGTTATGCCCTGGAGA-ACACTTCGTTTTAATGAGTGTGTGTGCTCACCTT 47772 Query 305439 ATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | ||||| ||||||||||| |||||||||||| ||| |||| ||| || Sbjct 47773 ACAATGCTGATTTTGATGGTGATGAAATGAATTGTCATCTACCACAAACA 47822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186805668367709