Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 4e-14 seq19 82.4 7e-11 >seq1 Length=711979 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 131921 TGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGT 131980 || ||| | ||||| || || |||||||| || | || || ||| || | ||| Sbjct 179582 TGGATGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCATCCAATTGT 179641 Query 131981 TTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTT 132040 || |||| | || | ||||||||||| ||||| |||||||| ||||| | | | || Sbjct 179642 TTGCCGGCGAATATCAAGCGCTGTTGATCCGGAGGAATGCCTTCCTTATC-CTGAATCTT 179700 Query 132041 TGTTTCAACTGT-TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGT 132099 | | ||| || || | || ||||| ||||| || || | ||||| || ||||| || Sbjct 179701 GGCCTTAACGGTCTCGATAGAGTCGGTGGGCTCAACCTCCAGCGTCAAGGTCTTACCCGT 179760 Query 132100 CAGAGTTTTTATGAAAATCTGCATG 132124 |||||| || | ||| ||||||||| Sbjct 179761 CAGAGTCTTGACGAATATCTGCATG 179785 >seq19 Length=197207 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 131933 TCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAG 131992 || || ||||||||||| ||| || || | || ||||||||||| || | | Sbjct 102056 TCCTTCTGAATGTTGTAATCGGACAACGTTCTACCTTCATCGAGCTGTTTGCCCGCGAAA 102115 Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTT--CAACT 132050 || |||||||||||||| ||||| |||||||| || || ||| || || |||| Sbjct 102116 ATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTAACAAC- 102174 Query 132051 GTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 132110 || | || || || ||||||||||| | || | ||| |||||||| | || || | Sbjct 102175 -GTCAATCGTGTCCGTGGGCTCCACTTCCAGGGTAATCGTCTTACCAGTTAACGTCTTGA 102233 Query 132111 TGAAAATCTGCAT 132123 || |||||||| Sbjct 102234 CAAAGATCTGCAT 102246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608405866840