Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq19 111 1e-19 seq1 98.7 9e-16 >seq19 Length=197207 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || || ||||| |||||||||||||||| ||| |||| | || || ||||| || ||| Sbjct 102050 GTGCTTTCCTTCTGAATGTTGTAATCGGACAACGTTCTACCTTCATCGAGCTGTTTGCCC 102109 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 || || |||| ||||| || || | ||| | || ||||||||| ||||| ||| Sbjct 102110 GCGAAAATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTA 102169 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | | | |||||| | | ||||| |||| || ||||| ||||| || || || Sbjct 102170 ACAACGTCAATCGTGTCCGTGGGCTCCACTTCCAGGGTAATCGTCTTACCAGTTAACGTC 102229 Query 35720 TTCACAAATATCTGCATTC 35738 || ||||| |||||||||| Sbjct 102230 TTGACAAAGATCTGCATTC 102248 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || | || | || ||| | || |||||||| || || || || || ||||| | Sbjct 102246 TTCCTCCTCTCAAACGCAGCACAAGGTGCAACGTACTTTCTTTCTGGATATTATAATCCG 102305 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || || | | || |||| |||||||| ||||| |||| |||||||| || | || Sbjct 102306 ATAACGTCCTACCCTCCTCCAATTGCTTACCAGCAAAAATCAGACGCTGCTGATCAGGAG 102365 Query 35628 GAACGCTCTCCTTGTCCATGA-TCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 | | || |||||||| |||| |||| ||||| || | || | || | | |||| Sbjct 102366 GGATGCCTTCCTTGTC-ATGAATCTTAGCCTTCACCGTATCAACAGAATCCGTAGGTTCC 102424 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| || ||||| || || || ||||| || ||||| |||||||| Sbjct 102425 ACCTCCAGAGTAATCGTCTTCCCAGTTAAAGTCTTAACAAAGATCTGCAT 102474 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 ||||| || | ||| | || || || || || |||||||||||||| || || || | Sbjct 101804 CTCAAGACGAGATGAATAGTGCTTTCTTTCTGGATGTTGTAATCGGCTAATGTCCGACCC 101863 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||| |||||||| || || |||| ||||| ||||||| |||| | || ||| Sbjct 101864 TCATCCAGTTGCTTACCAGCGAAAATCAGACGCTGTTGGTCCGGGGGAATACCTTCTTTG 101923 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 || ||||| ||| | || | || | ||| | | ||| || || | || ||| Sbjct 101924 TCTTGAATCTTGGCCTTAACGGTATCGACAGAGTCCGTTGGTTCGACTTCGAGAGTAATC 101983 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || || ||||| ||||| || || || ||||||| Sbjct 101984 GTCTTGCCAGTCAAGGTTTTGACGAAGATTTGCATTC 102020 >seq1 Length=711979 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | || || | || |||| || || || || || Sbjct 179593 CTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCATCCAATTGTTTGCCGGCGAA 179652 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||||| ||||| || |||| ||||| || ||||| ||| ||||| ||| | || Sbjct 179653 TATCAAGCGCTGTTGATCCGGAGGAATGCCTTCCTTATCCTGAATCTTGGCCTTAACGGT 179712 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||| | | || ||||||| ||| | || |||||||||| ||| || || Sbjct 179713 CTCGATAGAGTCGGTGGGCTCAACCTCCAGCGTCAAGGTCTTACCCGTCAGAGTCTTGAC 179772 Query 35725 AAATATCTGCAT 35736 ||||||||||| Sbjct 179773 GAATATCTGCAT 179784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450790957222520