Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq9 199 5e-46 seq23 87.8 2e-12 >seq9 Length=285593 Score = 199 bits (220), Expect = 5e-46 Identities = 508/765 (66%), Gaps = 10/765 (1%) Strand=Plus/Minus Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACAT 69336 || || || || || || |||| ||||| || | ||| | | ||| || || || Sbjct 71199 GAAGCGAGGTTGCATACAGCTATCTCATCAGGTGCGGTATACTCCACTATTTCAGTGCAG 71140 Query 69337 AGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCC 69396 ||||| || ||| ||||| |||| ||||| ||| || || ||| |||| || |||||| Sbjct 71139 AGATTGCTTGATTGAATAGTACCCAAATTTTTCTGGTTGCTTTTTCTGTTGCACGCGTCC 71080 Query 69397 TTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA-AAC 69455 ||||||| | || || || ||||||||||| || |||| | ||| | ||| ||| Sbjct 71079 TTGTAAACTAGGAATGGCGTTCCAGTTTCAATTTGGGATTGTAGAATGGCGAACCATAAC 71020 Query 69456 GACCCTAGCATTTATTACGGTCTTG---TAACGCTTCTCTTTTTCATATTGTGTATATAG 69512 || | || || || | || ||| ||||| | || ||||| | | | || || Sbjct 71019 GATTGT-GCCTTGAT--CTGT-TTGACATAACGACCTTGATTCTCATACTTTATGTACAG 70964 Query 69513 CCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAA 69572 | ||| || || | ||| || || | |||||||||| | |||||||| || Sbjct 70963 CTCTTCAAACTCTTTTCCATAAGAGGTGTCAAGTCCAGGACATAAGTGAGGACACATTAA 70904 Query 69573 TGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTAT 69632 ||| || ||||| | |||| || ||| ||||| |||| ||||| ||||||| Sbjct 70903 ACTCCAAGCACCATCAGATTGTACTCTTTCCATGAATAGGTCGGATATCCATAGAGCTAG 70844 Query 69633 AAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTC 69692 ||| | ||||| | ||| | |||||| || || || || || || | ||| || Sbjct 70843 AAATAAGTCTCTTGCTCTCTGTTCTTCTTTACCATGGTTCTTCCGGAGTTCAATAAAGTC 70784 Query 69693 CATAATATCAGAATGCCATGGTTCTAGATATATCGC-CATGACTCCCGGTCGTTTATTTC 69751 | | ||||| ||||||||| || | || || || |||| ||| ||||| | Sbjct 70783 GAACACATCAGCATGCCATGGCTCCAAGTAGATTGCGAATGA-GCCCTTGCGTTTGCCAC 70725 Query 69752 CTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCAT 69811 |||| || |||| || | ||| || ||| | ||||| ||||| ||||| || || | Sbjct 70724 CTCCTTGGTCTACATAGCGAGCACAGTCATTGAAAACTCTGAGCATTGGAATGATTCCGT 70665 Query 69812 TAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATA 69871 | | | | ||||| ||||| | ||| ||| ||||| | || | | ||| || | | Sbjct 70664 TCGCTCTTCCATTGGTTCCCGCAATGTAAGTTCCTGTAGCCCTGACTTTATGAACTGCAA 70605 Query 69872 GACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATAC 69931 | || || |||||||| ||| ||| || || || ||| ||||| ||| |||||| Sbjct 70604 GCCCAATACCTCCTGCATATTTGCTGATGAGTGCGCATGATTTTAATGTCTCAAATATAC 70545 Query 69932 CCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAG 69991 | | || ||||| ||| ||| | ||||| |||||| ||||| ||| | | | Sbjct 70544 CTGCGATACTATCCTCTGCCATTTGCAGAAGGAAACAGGAGGACATCTGAGGTCTTGCCG 70485 Query 69992 TTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTT 70036 | || ||||| || || ||||| | || ||||| || | |||| Sbjct 70484 TCCCTGCATTGAACAAGGTAGGGGTAGCATGAGTAAAGAACTTTT 70440 >seq23 Length=179919 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCA 39691 || |||||||| || || ||| | |||||| || ||||| || |||| || ||| Sbjct 161536 TGGAGGCCCTCGTCCCTTGAAATGAGTTCGTTGCTGAAGGTGAGGCCGGGCAAGAGTCCA 161595 Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCT 39751 || || |||| ||| || ||||| |||||| |||||||| ||||||||||| ||||| Sbjct 161596 CGTTTCTTGAACCAGAAGATGGCGCAAAAAGAGCCAGAAAATAAGATGCCTTCGACTGC- 161654 Query 39752 GCAAA 39756 ||||| Sbjct 161655 GCAAA 161659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686904772997160