Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq26 123 2e-23 >seq26 Length=174519 Score = 123 bits (136), Expect = 2e-23 Identities = 323/489 (66%), Gaps = 19/489 (4%) Strand=Plus/Plus Query 19338 ACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAG 19397 ||| || || ||| | ||| | || || || |||||| || |||||||||||||| | Sbjct 124245 ACACGTGCGCGGATTATTGTTATACGGTCCCCCGGGTACAGGTAAAACATTAATTGCTCG 124304 Query 19398 AGAACTTAGTAAATTACTTACAAAAC--AACCTCCCAAAATTGTAAATGGTCCTGAAATC 19455 | || | ||| ||| || | || || || |||||||| ||||| || | Sbjct 124305 TCAGATTGGAAAAGC-CTTG-AAGGCGAAAGAGCCGAAGATTGTAAACGGTCCGGAGGTG 124362 Query 19456 TTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAA 19515 |||||||| | ||| ||||| || ||||| || | ||| || |||||||| ||||| Sbjct 124363 TTAAATAAGTTTGTTGGTCAGTCTGAAGAGAACATTCGAAACTTATTTGCTGAGGCTGAG 124422 Query 19516 ---GAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAA 19572 || ||| ||||| || || || ||||||| || || || | |||||| Sbjct 124423 ATTGATGAAAAAAAA---TTTGGTATAAACTCGCCTTTGCATATCATCATTTTTGATGAA 124479 Query 19573 TTGGACGCAATCTGTAAGCA---------AAGAGGTTCTGGTGTAAATGGAGTACATGAC 19623 ||||| || || |||||||| | ||| || ||| | ||| || |||| Sbjct 124480 TTGGATGCGATATGTAAGCAGCGTGGTAGTACAGGAGCTAGTGGTAGTGGTGTGAATGAT 124539 Query 19624 ACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTA 19683 |||| || |||||| | || || || | || ||||||||| |||||||||| || Sbjct 124540 TCTGTAGTGAATCAATTACTTTCGAAGATTGATGGTGTTAACTCTTTGAATAATATCTTG 124599 Query 19684 GTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGG 19743 | ||||| ||||| ||| | |||| | | || || |||||| |||| ||| | Sbjct 124600 CTAATTGGAATGACCAATCGTATGGATATGTTGGATGAGGCATTATTAAGACCGGGTAGA 124659 Query 19744 TTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAAC 19803 ||||| || | || ||||| | || ||||| | ||| || | ||||| || Sbjct 124660 CTGGAAGTACAAATAGAAATCGGTCTGCCAGATGAGTTTGGTCGAAATCAGATTTTGAAA 124719 Query 19804 ATACATACA 19812 || |||||| Sbjct 124720 ATCCATACA 124728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453728166345