Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq19 114 1e-20 seq9 86.0 5e-12 >seq19 Length=197207 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 27057 TCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTA 27115 ||||| || || ||||| ||| || |||| || | || || || || ||||| ||| | Sbjct 101828 TCTTTCTGGATGTTGTAATCGGCTAATGTC-CGACCCTCATCCAGTTGCTTACCAGCGAA 101886 Query 27116 AATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGT 27175 ||| ||||||||||| ||||| || | ||| ||||| || |||||| || | ||| Sbjct 101887 AATCAGACGCTGTTGGTCCGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGGT 101946 Query 27176 TTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCAC 27235 || |||| ||| || | ||| ||||| ||||| || | ||||| |||| ||||| || Sbjct 101947 ATCGACAGAGTCCGTTGGTTCGACTTCGAGAGTAATCGTCTTGCCAGTCAAGGTTTTGAC 102006 Query 27236 AAAGATTTGCAT 27247 ||||||||||| Sbjct 102007 GAAGATTTGCAT 102018 >seq9 Length=285593 Score = 86.0 bits (94), Expect = 5e-12 Identities = 226/342 (66%), Gaps = 5/342 (1%) Strand=Plus/Minus Query 131693 TCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAA-AAAGTCCAAAAT 131751 ||||| ||| | | |||||| |||| || || || | || || |||||| || | Sbjct 70836 TCTCTTGCTCTCTGTTCTTCTTTACC-ATGGTTCTTCCGGAGTTCAATAAAGTCGAACAC 70778 Query 131752 GTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTG 131808 || |||||||| || ||||| || | ||| | || ||| ||||| || ||| ||||| Sbjct 70777 ATCAGCATGCCATGGCTCCAAGTAGATTGCGAATGAGCCCTTGCGTTTGCCACCTCCTTG 70718 Query 131809 ATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTT 131868 | |||| ||| | || ||| | || | | ||| || | ||||| || | Sbjct 70717 GTCTACATAGCGAGCACAGTCATTGAAAACTCTGAGCATTGGAATGATTCCGTTCGCTCT 70658 Query 131869 TCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAAT 131928 ||||||||| | | |||||| | || | || |||| ||| ||||| || ||||| Sbjct 70657 TCCATTGGTTCCCGCAATGTAAGTTCCTGTAGCCCTGACTTTATGAACTGCAAGCCCAAT 70598 Query 131929 ACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCAC 131988 |||||| | ||||| ||| ||||||||| ||| || | | | |||||| | | Sbjct 70597 ACCTCCTGCATATTTGCTGATGAGTGCGCATGATTTTAATGTCTCAAATATACCTGCGAT 70538 Query 131989 GCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGACAACTG 132030 || ||| | || || | | | || || ||||||| ||| Sbjct 70537 ACTATCCTCTGCCATTTGCAGAAGGAAACAGGAGGACATCTG 70496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931971101528