Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq9 132 6e-26 seq274 86.0 8e-12 >seq9 Length=285593 Score = 132 bits (146), Expect = 6e-26 Identities = 248/363 (68%), Gaps = 6/363 (2%) Strand=Plus/Minus Query 111052 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC 111111 ||| || | |||||||| ||| | ||||| |||||||| ||||| || ||||| | || Sbjct 71389 ATCGGCCAAACCTTGAATACCGATGCCAATGGGTCTGTGGCGCATGTTGGACTTCCTCGT 71330 Query 111112 AGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTT 111171 | |||||| || ||| |||||||||||| || ||| | ||| | ||||| | | Sbjct 71329 GGCCTCAACAGGGTAATGATTTCTGTCAATCACCTTGTTCAAGTTTCTCGTAACTACATG 71270 Query 111172 TGTGATTTCATG---AAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTT 111228 |||| || | |||||||| || ||||| | || | || || |||| |||| Sbjct 71269 GGTGA---CACGTCTCAGTTTTTCGTAGTCAAACGATCGGCTATCAAGATCGACAAACTT 71213 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 ||| | || | || || | ||||| ||||| ||||||| | || ||||| | Sbjct 71212 TGGCAAGGACAACGAAGCGAGGTTGCATACAGCTATCTCATCAGGTGCGGTATACTCCAC 71153 Query 111289 AATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTT 111348 ||||| || || | ||| | ||| || |||||||| || ||||| || || | Sbjct 71152 TATTTCAGTGCAGAGATTGCTTGATTGAATAGTACCCAAATTTTTCTGGTTGCTTTTTCT 71093 Query 111349 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAAT 111408 ||||||||| |||||||| | | | | ||||| || || || | || |||| ||||| Sbjct 71092 GTTGCACGCGTCCTTGTAAACTAGGAATGGCGTTCCAGTTTCAATTTGGGATTGTAGAAT 71033 Query 111409 AGC 111411 || Sbjct 71032 GGC 71030 >seq274 Length=342631 Score = 86.0 bits (94), Expect = 8e-12 Identities = 182/269 (68%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 11633 TCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCG 11692 |||||||| || || || |||||| ||| ||||| ||| || | |||| | || Sbjct 329455 TCAATCTCGTCGATAAACACAATAGCTGGCGCATTTTTGCGCGCCTTAGCAAACAAGTCA 329396 Query 11693 CGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGG 11752 |||| |||| ||||| || || ||||||||||| | ||||| | | ||| || Sbjct 329395 CGAATCCTTGAAGCACCAACTCCCACAAACATCTCAATAAAGTCCGAACCCGAG-GTTGA 329337 Query 11753 ATGAATGGG-ACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACC 11811 | || ||| ||| || ||||| || || || || || | | |||||| |||||||| Sbjct 329336 GTAAAAGGGCACACCTGCCTCACCTGCAATAGCCCGCGCTAACAAGGTCTTACCCGTACC 329277 Query 11812 TGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTC 11871 ||| |||| | || | |||||| ||| |||| || || | || |||| Sbjct 329276 CGGCGGACCCACCAGCAACGCGCCTTTGGGAATCTGCGCTCCTAAACTCGTGTACTTCTC 329217 Query 11872 GGGTTGCTTGAGAAAATCCACAATCTCTT 11900 || || || ||||| ||||||| ||||| Sbjct 329216 CGGGTGTTTTAGAAAGTCCACAAACTCTT 329188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028318162400