Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq18 190 6e-43 seq19 149 2e-30 seq35 123 8e-23 seq1 120 9e-22 seq12 96.9 1e-14 >seq18 Length=195987 Score = 190 bits (210), Expect = 6e-43 Identities = 466/702 (66%), Gaps = 7/702 (1%) Strand=Plus/Plus Query 349203 TAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAG 349262 |||| || ||||| ||||| || || || ||||| || || || | ||| |||| | Sbjct 171702 TAGGCATTGATTTGGGTACGACCTACTCCTGTGTGGCCGTGGTGCGACCTGAGGGTGTCG 171761 Query 349263 AAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAA 349322 |||| |||||||| ||||| ||||||||||| || || || ||||| || ||||| || Sbjct 171762 AAATTATTGCAAACGATCAGGGTAACAGAACTACCCCTTCTTACGTGGCCTTTACTGACT 171821 Query 349323 CTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGG 349382 | |||||| |||||||||| | || || || |||| || || || || || | Sbjct 171822 CGGAGCGTTTGATTGGTGACGCGGCGAAGAACCAAGTGGCGAAGAACCCGGCGAACACTG 171881 Query 349383 TTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATC 349442 | ||||| |||||||| | |||||| | | || || | || ||| ||||| Sbjct 171882 TGTTTGACGCTAAGCGTTTGATTGGTCGGAAGTTCCAAGATGATGCTGTACAGTCTGACA 171941 Query 349443 TAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTG 349502 | || || | ||||| | || || | || || || | |||||||| Sbjct 171942 TGAAGCACTGGCCTTTCAAGGTGAAGCCTGACCCTACTGGCAAGCCTGTGATTGAGGTGC 172001 Query 349503 AATATAAAGGTG-AACAAAAACAATTTTTAC-CCGAAGAAATTTCATCAATGGTTTTAGT 349560 | ||| | || | || || || || || |||| || ||||| | ||||| || | Sbjct 172002 AGTATCAGGGAGCGACGAAGAC--GTTCCACGCCGAGGAGATTTCGGCCATGGTGTTGAT 172059 Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTAC 349620 ||| |||||||| | ||||| || || | || | || || | ||||| ||||| Sbjct 172060 TAAGATGAAGGAGACCGCTGAGGCTTACCTCGGAACGAAGGTGACGCAGGCTGTCATTAC 172119 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || || || || || || ||| | ||||| ||||| || ||||| ||| |||||| Sbjct 172120 CGTCCCTGCGTACTTCAACGATTCTCAGCGCCAGGCAACCAAGGATGCCGGCGCCATTGC 172179 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || | | || || | || || || || || ||||||||||| || ||||| || | Sbjct 172180 TGGTCTCCAGGTGCTCCGCATCATCAACGAGCCGACTGCTGCAGCTATCGCATACGGCTT 172239 Query 349741 TGATAAAATGAGTGAC---CAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || | | ||| || || ||| | || || || || | ||||| || || Sbjct 172240 GGACAAGAAGGCCGACGCGGGCGAGAAGAATGTGCTCATCTTCGACCTCGGTGGCGGCAC 172299 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 || ||||| || || || || |||| || || || || ||||| || || || ||||| Sbjct 172300 CTTCGATGTCTCTCTCCTCACCATTGAGGAAGGCATCTTCGAAGTCAAGGCCACGGCTGG 172359 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 ||| || || | || || || ||||| || || || || || Sbjct 172360 TGACACGCACTTGGGCGGTGAGGATTTCGACAACCGCCTTGT 172401 >seq19 Length=197207 Score = 149 bits (164), Expect = 2e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || | ||| ||||| || ||||||||||| ||||| || | || || Sbjct 102263 AGCACAAGGTGCAACGTACTTTCTTTCTGGATATTATAATCCGATAACGTCCTACCCTCC 102322 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || | ||| || |||||||| || ||||| |||||||||||||| || ||||| || || Sbjct 102323 TCCAATTGCTTACCAGCAAAAATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCA 102382 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| ||||| || || |||||| ||||| | ||||| || || || |||| ||| Sbjct 102383 TGAATCTTAGCCTTCACCGTATCAACAGAATCCGTAGGTTCCACCTCCAGAGTAATCGTC 102442 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || |||| || || ||||| |||||||| Sbjct 102443 TTCCCAGTTAAAGTCTTAACAAAGATCTGCAT 102474 Score = 132 bits (146), Expect = 1e-25 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| ||||| | || | || ||||| || || || || || ||||| || | Sbjct 102012 TTTGCATTCCACCTCTCAAACGGAGCACAAGGTGCAGTGTGCTTTCCTTCTGAATGTTGT 102071 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || || |||| || || || || ||||| || || || || ||||| || |||| Sbjct 102072 AATCGGACAACGTTCTACCTTCATCGAGCTGTTTGCCCGCGAAAATCAGACGCTGTTGAT 102131 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || ||||| || |||||||| || || || ||| ||||||| || | | Sbjct 102132 CAGGAGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTAACAACGTCAATCGTGTCCGTGG 102191 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || ||||| || |||| ||||| || |||| || || ||||| ||||||||| Sbjct 102192 GCTCCACTTCCAGGGTAATCGTCTTACCAGTTAACGTCTTGACAAAGATCTGCATT 102247 >seq35 Length=138074 Score = 123 bits (136), Expect = 8e-23 Identities = 189/269 (70%), Gaps = 3/269 (1%) Strand=Plus/Plus Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 || ||||| || || || || || || ||||| || || ||||| ||||| | ||| Sbjct 46868 ACAGTACCGGCGTACTTCAACGACGCACAGCGACAGGCGACCAAAGACGCTGGAACCATC 46927 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 ||||| | || ||| | |||| ||||| ||||| || || || ||||| || || ||| Sbjct 46928 TCGGGGCTGAACGTTATCCGAATTATTAACGAACCGACAGCGGCGGCAATCGCTTACGGG 46987 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 | || || || | | || || || ||||| | | ||||| |||||||| ||| Sbjct 46988 TTGGACAA---GAAAGGCGGTGAGAAGAACATTCTAGTGTACGATTTGGGTGGTGGCACT 47044 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 ||||||||||| || || || |||| | ||| |||||||||| || || ||| Sbjct 47045 TTTGATGTATCTCTCCTTACTATTGACAACGGAGTTTTTGAAGTGGTCGCGACCAATGGA 47104 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGA 349887 || |||||| | || || |||||||| || Sbjct 47105 GACACACATTTGGGCGGTGAAGATTTCGA 47133 >seq1 Length=711979 Score = 120 bits (132), Expect = 9e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 140522 TCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCC 140581 ||| || ||||| || | |||||||| || || || || ||||| || | || || || Sbjct 179569 TCTGAGGACAAGGTGGATGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCC 179628 Query 140582 ATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTT 140641 ||| || | |||||| || || || || | || || ||||| |||||||| ||||| || Sbjct 179629 ATCATCCAATTGTTTGCCGGCGAATATCAAGCGCTGTTGATCCGGAGGAATGCCTTCCTT 179688 Query 140642 ATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAAC 140701 ||||||||| || || || || | || || || || | || ||||| || || || | Sbjct 179689 ATCCTGAATCTTGGCCTTAACGGTCTCGATAGAGTCGGTGGGCTCAACCTCCAGCGTCAA 179748 Query 140702 TGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || || || || || |||||||| Sbjct 179749 GGTCTTACCCGTCAGAGTCTTGACGAATATCTGCAT 179784 >seq12 Length=255242 Score = 96.9 bits (106), Expect = 1e-14 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 423769 TGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGGCGAAAGCCTCGTGGGT 423828 |||||||||||| ||| |||||||| ||||||||||||| ||| |||||| | ||||||| Sbjct 1310 TGGATGCCCGAGAGGT-TAAGGGGGGAGACTTAAGATCTTCTGACGAAAGTCGCGTGGGT 1252 Query 423829 TCAAACCCCACTCCG 423843 || |||||||||||| Sbjct 1251 TCGAACCCCACTCCG 1237 Score = 84.2 bits (92), Expect = 7e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 74479 TTGTATGGAGTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCC 74538 |||| |||||||| |||||||||||| | ||| || ||| ||| ||| ||||| ||||| Sbjct 1232 TTGTGCGGAGTGGGGTTCGAACCCACGCGACTTTCGTCAGAAGATCTTAAGTCTCCCCCC 1291 Query 74539 TTAGACCACTCGGGCATCCATAC 74561 ||| ||| |||||||||||| || Sbjct 1292 TTA-ACCTCTCGGGCATCCACAC 1313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515245294741607