Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq23 111 2e-19 seq9 111 2e-19 >seq23 Length=179919 Score = 111 bits (122), Expect = 2e-19 Identities = 143/191 (75%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 59931 AAAGCAGAATGGGCCATGCAGTGGATGAGTC-CTGGAGCATCATTTGCACAACGTCTCAT 59989 || || || ||||| | ||||||||| || | || || | ||||| |||| || | Sbjct 161723 AAGGCGGAGTGGGCAGTCAAGTGGATGAATCACAAGAACA-CTTTTGCCGAACGACTACT 161665 Query 59990 AGC-TTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGG 60047 || |||||| || || ||||| ||||| || |||||||| || || || || |||||| Sbjct 161664 AGGATTTTGC--GCAGTCGAAGGCATCTTATTTTCTGGCTCTTTTTGCGCCATCTTCTGG 161607 Query 60048 CTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGAC 60107 |||| || ||||| ||| |||| ||||| | ||| |||||| || ||||| ||||| Sbjct 161606 TTCAAGAAACGTGGACTCTTGCCCGGCCTCACCTTCAGCAACGAACTCATTTCAAGGGAC 161547 Query 60108 GAGGGCCTCCA 60118 ||||||||||| Sbjct 161546 GAGGGCCTCCA 161536 >seq9 Length=285593 Score = 111 bits (122), Expect = 2e-19 Identities = 273/410 (67%), Gaps = 12/410 (3%) Strand=Plus/Plus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 |||| ||||| || |||| || |||||||| || || || || || ||| | ||||| Sbjct 70418 GAGAGTTACGAGCTAATGACACAAAAGTTCTTTACTCATGCTACCCCTACCTTGTTCAAT 70477 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 || || ||| | || |||||||| ||||||||| || ||| || || || Sbjct 70478 GCAGGGACGGCAAGACCTCAGATGTCCTCCTGTTTCCTTCTGCAAATGGCAGAGGATAGT 70537 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 || | || || | ||||| | || ||||| | |||| ||| | | || ||| Sbjct 70538 ATCGCAGGTATATTTGAGACATTAAAATCATGCGCACTCATCAGCAAATATGCAGGAGGT 70597 Query 19346 ATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAAT---CAATGGG---ACG 19399 || ||| | | | || | | ||| || | |||| ||| || || | || Sbjct 70598 ATTGGGCTTG-CAGTTCATAAA----GTC-AGGGCTACAGGAACTTACATTGCGGGAACC 70651 Query 19400 AACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTAC 19459 || ||| ||| |||| ||| | ||||||||| | || ||||| || || | || Sbjct 70652 AATGGAAGAGCGAACGGAATCATTCCAATGCTCAGAGTTTTCAATGACTGTGCTCGCTAT 70711 Query 19460 GTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCAC 19519 || |||| || || ||||||||||||||||| ||||| |||||| | ||||||||||| Sbjct 70712 GTAGACCAAGGAGGTGGCAAACGCAAGGGCTCATTCGCAATCTACTTGGAGCCATGGCAT 70771 Query 19520 GCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGA 19569 || || || | || || | ||||| || |||||| ||| | || || Sbjct 70772 GCTGATGTGTTCGACTTTATTGAACTCCGGAAGAACCATGGTAAAGAAGA 70821 Score = 86.0 bits (94), Expect = 7e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 78199 TAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTG 78258 || ||||| ||||| || || ||| | ||||| |||| | |||||| ||| |||||| Sbjct 72105 TAATACATACCCGTTTTAAGCCCCGTTTTCCAGGCGTAGAAGTGCATGGACGAGAGCTTG 72046 Query 78259 GCCAGACTCGGG-TTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACC 78317 || | || ||| ||| || | | | || |||||||| ||||||||||| ||| ||| Sbjct 72045 GCAA-ACGAGGGATTCATCACGTACAGATTCAGCGACTGCGACTGGTCGATAAACGGACC 71987 Query 78318 GCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGT 78368 | |||| |||| |||||||| | | ||| ||||||||| | ||| Sbjct 71986 CCTTGCGGCAGCCAAGTCGATGAGTGTTCTCTGCTTAATCTCCCACACGGT 71936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548521584273360