Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq19 134 2e-26 >seq19 Length=197207 Score = 134 bits (148), Expect = 2e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| ||||| || | || |||||||| |||||||| || || || || Sbjct 102019 AATGCAAATCTTCGTCAAAACCTTGACTGGCAAGACGATTACTCTCGAAGTCGAACCAAC 101960 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | | | | ||||| || ||||| ||||| || || ||||| || ||||| Sbjct 101959 GGACTCTGTCGATACCGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCGGACCA 101900 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||| ||||| |||||||||||||| || || | ||| || |||| || || || Sbjct 101899 ACAGCGTCTGATTTTCGCTGGTAAGCAACTGGATGAGGGTCGGACATTAGCCGATTACAA 101840 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || ||| |||| ||||||| |||||| Sbjct 101839 CATCCAGAAAGAAAGCACTATTCATCTCGTCTTG 101806 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || || ||||| |||||||| ||||| || | Sbjct 102474 ATGCAGATCTTTGTTAAGACTTTAACTGGGAAGACGATTACTCTGGAGGTGGAACCTACG 102415 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| ||| | |||||||||| ||||| |||||||| || || ||||| || ||| Sbjct 102414 GATTCTGTTGATACGGTGAAGGCTAAGATTCATGACAAGGAAGGCATCCCTCCTGATCAG 102355 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||||||||||||| | ||||| | | | || || | || |||||| Sbjct 102354 CAGCGTCTGATTTTTGCTGGTAAGCAATTGGAGGAGGGTAGGACGTTATCGGATTATAAT 102295 Query 27586 GTCCAAAAGGAA 27597 |||| || ||| Sbjct 102294 ATCCAGAAAGAA 102283 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||||||||||||| | || || ||||| ||||| || || || ||| | Sbjct 102247 AATGCAGATCTTTGTCAAGACGTTAACTGGTAAGACGATTACCCTGGAAGTGGAGCCCAC 102188 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| | | ||||| || |||||||||||||| || || ||||| || || Sbjct 102187 GGACACGATTGACGTTGTTAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCA 102128 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||| ||||| || || || || ||||| || | | | || | | || || || Sbjct 102127 ACAGCGTCTGATTTTCGCGGGCAAACAGCTCGATGAAGGTAGAACGTTGTCCGATTACAA 102068 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || |||||| ||| || || || || | ||| | | |||||| Sbjct 102067 CATTCAGAAGGAAAGCACACTGCACCTTGTGCTCCGTTTGAGAGGTGGA 102019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307056555280