Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1 145 7e-30 seq19 132 4e-26 >seq1 Length=711979 Score = 145 bits (160), Expect = 7e-30 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||||||||| || || |||||||| || ||| | | || || || || || || Sbjct 179786 CCATGCAGATATTCGTCAAGACTCTGACGGGTAAGACCTTGACGCTGGAGGTTGAGCCCA 179727 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 ||||||| || |||| || || || ||||| || || |||||||| || || |||| Sbjct 179726 CCGACTCTATCGAGACCGTTAAGGCCAAGATTCAGGATAAGGAAGGCATTCCTCCGGATC 179667 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 ||||||| || |||| |||||||||||||||||| || | || |||| ||||||| Sbjct 179666 AACAGCGCTTGATATTCGCCGGCAAACAATTGGATGATGGCCGCACTCTTTCGGATTACA 179607 Query 27166 ACATTCAAAAGGAGTCGACC 27185 |||| || |||||||| ||| Sbjct 179606 ACATCCAGAAGGAGTCTACC 179587 >seq19 Length=197207 Score = 132 bits (146), Expect = 4e-26 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || | || || ||| | ||||| || |||||||| || | Sbjct 102246 ATGCAGATCTTTGTCAAGACGTTAACTGGTAAGACGATTACCCTGGAAGTGGAGCCCACG 102187 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || || ||||| ||||| |||||||| || || |||||| Sbjct 102186 GACACGATTGACGTTGTTAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAA 102127 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 |||||| | || | ||| |||||||| | || || || | || |||| ||||||||||| Sbjct 102126 CAGCGTCTGATTTTCGCGGGCAAACAGCTCGATGA-AGGTAGAACGTTGTCCGATTACAA 102068 Query 27167 CATTCAAAAGGA 27178 |||||| ||||| Sbjct 102067 CATTCAGAAGGA 102056 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| |||| |||||| | |||||||| ||||| ||||| | Sbjct 102018 ATGCAAATCTTCGTCAAAACCTTGACTGGCAAGACGATTACTCTCGAAGTCGAACCAACG 101959 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| | || | || || || ||||||||||||||||| || || || || ||| Sbjct 101958 GACTCTGTCGATACCGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCGGACCAA 101899 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || ||| |||| || || ||| | ||||||||||| Sbjct 101898 CAGCGTCTGATTTTCGCTGGTAAGCAACTGGATGAGGGTCGGACATTAGCCGATTACAAC 101839 Query 27168 ATTCAAAAGGA 27178 || || || || Sbjct 101838 ATCCAGAAAGA 101828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915850290880