Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 154 3e-32 seq19 114 3e-20 >seq1 Length=711979 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||||||||| | || ||||| || |||||||| ||||||| ||| || | Sbjct 179567 AGTCTGAGGACAAGGTGGATGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGG 179626 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| |||| || ||||| ||||| || | ||| ||||| || ||||||| |||||| Sbjct 179627 CCATCATCCAATTGTTTGCCGGCGAATATCAAGCGCTGTTGATCCGGAGGAATGCCTTCC 179686 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || ||||| ||||| || ||| | ||||| | ||| | | |||||||| || || Sbjct 179687 TTATCCTGAATCTTGGCCTTAACGGTCTCGATAGAGTCGGTGGGCTCAACCTCCAGCGTC 179746 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| |||||||| || || | |||||| Sbjct 179747 AAGGTCTTACCCGTCAGAGTCTTGACGAATATCTGCAT 179784 >seq19 Length=197207 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||| || || || ||||| ||||| | | || || || || Sbjct 102035 AGCACAAGGTGCAGTGTGCTTTCCTTCTGAATGTTGTAATCGGACAACGTTCTACCTTCA 102094 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| ||||| ||||| || || || ||||| |||||||| | |||||||||||| Sbjct 102095 TCGAGCTGTTTGCCCGCGAAAATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTTGTCC 102154 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || || ||||| | | || || || || || |||||| Sbjct 102155 TGAATCTTGGCCTTAACAACGTCAATCGTGTCCGTGGGCTCCACTTCCAGGGTAATCGTC 102214 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || | ||||| ||||| | ||||||| Sbjct 102215 TTACCAGTTAACGTCTTGACAAAGATCTGCATT 102247 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| | || ||||| ||||| |||||||||| | ||||| || || Sbjct 102263 AGCACAAGGTGCAACGTACTTTCTTTCTGGATATTATAATCCGATAACGTCCTACCCTCC 102322 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || || || || || || || || |||||||| | ||||||||||| Sbjct 102323 TCCAATTGCTTACCAGCAAAAATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCA 102382 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| | || | | || | ||| ||||| ||||| |||||| Sbjct 102383 TGAATCTTAGCCTTCACCGTATCAACAGAATCCGTAGGTTCCACCTCCAGAGTAATCGTC 102442 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||| ||||| | |||||| Sbjct 102443 TTCCCAGTTAAAGTCTTAACAAAGATCTGCAT 102474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159145034583185