Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq19 84.2 2e-11 >seq19 Length=197207 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| || || | ||| | || || ||||| || || || || || ||||||| Sbjct 102020 CCACCTCTCAAACGGAGCACAAGGTGCAGTGTGCTTTCCTTCTGAATGTTGTAATCGGAC 102079 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | |||| | ||||| |||||||||||||| || || |||||||| || || | || Sbjct 102080 AACGTTCTACCTTCATCGAGCTGTTTGCCCGCGAAAATCAGACGCTGTTGATCAGGAGGG 102139 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | || || |||||| ||| | | | | | | || | | ||| || | | |||||| Sbjct 102140 ATGCCTTCCTTGTCC-TGAATCTTGGCCTTAACAACGTCAATCGTGTCCGTGGGCTCCAC 102198 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || | || || || | ||| || |||||||| ||||| Sbjct 102199 TTCCAGGGTAATCGTCTTACCAGTTAACGTCTTGACAAAGATCTGCAT 102246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429543144744197