Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq19 132 3e-26 seq1 104 2e-17 >seq19 Length=197207 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| |||||| | || || || ||||| ||||||||||| || | || Sbjct 102019 AATGCAAATCTTCGTCAAAACCTTGACTGGCAAGACGATTACTCTCGAAGTCGAACCAAC 101960 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||| |||| || | | || || ||| |||||||||||| | || || || || Sbjct 101959 GGACTCTGTCGATACCGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCGGACCA 101900 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || || || || |||||||| || | || || |||| ||||||||| Sbjct 101899 ACAGCGTCTGATTTTCGCTGGTAAGCAACTGGATGAGGGTCGGACATTAGCCGATTACAA 101840 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || ||||| ||| | ||| | || || || || ||||||| Sbjct 101839 CATCCAGAAAGAAAGCACTATTCATCTCGTCTTGAGACTGAGAGGAGG 101792 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || | || || || ||||| || || ||||| || |||| Sbjct 102247 AATGCAGATCTTTGTCAAGACGTTAACTGGTAAGACGATTACCCTGGAAGTGGAGCCCAC 102188 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| | | || || ||| ||||| ||||| | || || ||||| Sbjct 102187 GGACACGATTGACGTTGTTAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCA 102128 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || || |||||||| || || || | | || || ||||||||| Sbjct 102127 ACAGCGTCTGATTTTCGCGGGCAAACAGCTCGATGAAGGTAGAACGTTGTCCGATTACAA 102068 Query 23790 CATACAAAAAGA 23801 ||| || || || Sbjct 102067 CATTCAGAAGGA 102056 >seq1 Length=711979 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || ||||| || || | || || || ||||| |||| Sbjct 179784 ATGCAGATATTCGTCAAGACTCTGACGGGTAAGACCTTGACGCTGGAGGTTGAGCCCACC 179725 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || | || | | || || ||| || || ||||| | || || |||||| Sbjct 179724 GACTCTATCGAGACCGTTAAGGCCAAGATTCAGGATAAGGAAGGCATTCCTCCGGATCAA 179665 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || ||||| |||||||||||| |||| || | |||||| | ||||||||| Sbjct 179664 CAGCGCTTGATATTCGCCGGCAAACAATTGGATGATGGCCGCACTCTTTCGGATTACAAC 179605 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 179604 ATCCAGAAGGAGTCTAC 179588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007667958252