Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq19 152 1e-31 seq358 109 1e-18 seq1 109 1e-18 >seq19 Length=197207 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||||| ||| || || | |||| |||||| |||| ||||||||||| || || | Sbjct 101801 AGTCTCAAGACGAGATGAATAGTGCTTTCTTTCTGGATGTTGTAATCGGCTAATGTCCGA 101860 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || || ||||| |||||||| || || || |||||||| || ||||||||||| Sbjct 101861 CCCTCATCCAGTTGCTTACCAGCGAAAATCAGACGCTGTTGGTCCGGGGGAATACCTTCT 101920 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||| ||||| ||| || | |||| | ||| | | ||| || || | || Sbjct 101921 TTGTCTTGAATCTTGGCCTTAACGGTATCGACAGAGTCCGTTGGTTCGACTTCGAGAGTA 101980 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||||||||| ||||| ||||| | ||| | ||||||| Sbjct 101981 ATCGTCTTGCCAGTCAAGGTTTTGACGAAGATTTGCATT 102019 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| || ||| ||| || || | |||||||||| ||| ||||| || || Sbjct 102035 AGCACAAGGTGCAGTGTGCTTTCCTTCTGAATGTTGTAATCGGACAACGTTCTACCTTCA 102094 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || ||||| || || || ||||| || || || || ||||||||||| Sbjct 102095 TCGAGCTGTTTGCCCGCGAAAATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTTGTCC 102154 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| | || || ||||| | || ||||| || | || |||||| Sbjct 102155 TGAATCTTGGCCTTAACAACGTCAATCGTGTCCGTGGGCTCCACTTCCAGGGTAATCGTC 102214 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || || | || | |||||| Sbjct 102215 TTACCAGTTAACGTCTTGACAAAGATCTGCATT 102247 Score = 91.5 bits (100), Expect = 4e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| |||||||| | || |||||| |||| ||| ||||| | || || || || || Sbjct 102262 CAGCACAAGGTGCAACGTACTTTCTTTCTGGATATTATAATCCGATAACGTCCTACCCTC 102321 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || | ||||| ||||| || || || || || || || || || || ||||||||||| Sbjct 102322 CTCCAATTGCTTACCAGCAAAAATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTC 102381 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || ||||| |||||| | || | | || | | |||||| || | || ||||| Sbjct 102382 ATGAATCTTAGCCTTCACCGTATCAACAGAATCCGTAGGTTCCACCTCCAGAGTAATCGT 102441 Query 225681 CTTGCCCGTCAAAGTTTT 225698 ||| || || ||||| || Sbjct 102442 CTTCCCAGTTAAAGTCTT 102459 >seq358 Length=1156 Score = 109 bits (120), Expect = 1e-18 Identities = 101/127 (80%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| || ||||||||||||| ||||||||||| | | | Sbjct 164 TGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 105 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CGC 7854 |||||| || |||||||||| ||||||||||||||| | | |||| ||| | ||| || Sbjct 104 CCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGAGTGCTTATTGC 45 Query 7855 GTTAGCT 7861 ||||||| Sbjct 44 GTTAGCT 38 >seq1 Length=711979 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| ||||||||||||| || || || || |||| |||||||| | | ||| | Sbjct 179567 AGTCTGAGGACAAGGTGGATGGTAGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGG 179626 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || | || || || ||||| || | || ||||| || || ||||| |||||| Sbjct 179627 CCATCATCCAATTGTTTGCCGGCGAATATCAAGCGCTGTTGATCCGGAGGAATGCCTTCC 179686 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || || || ||||| ||| || | ||||| | ||| | || || || || | ||| Sbjct 179687 TTATCCTGAATCTTGGCCTTAACGGTCTCGATAGAGTCGGTGGGCTCAACCTCCAGCGTC 179746 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| ||||||| ||| || | ||| | ||||| Sbjct 179747 AAGGTCTTACCCGTCAGAGTCTTGACGAATATCTGCAT 179784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192524034005486