Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq9 212 9e-50 >seq9 Length=285593 Score = 212 bits (234), Expect = 9e-50 Identities = 606/920 (66%), Gaps = 14/920 (2%) Strand=Plus/Minus Query 77685 GATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACAT 77744 || || || || || || |||| ||||| || || ||| | | ||| || || || Sbjct 71199 GAAGCGAGGTTGCATACAGCTATCTCATCAGGTGCGGTATACTCCACTATTTCAGTGCAG 71140 Query 77745 AGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCC 77804 ||||| || ||| ||||| |||| ||||| |||||||| ||| | ||||| | |||| Sbjct 71139 AGATTGCTTGATTGAATAGTACCCAAATTTTTCTGGTTGCTTTTTCTGTTGCACGCGTCC 71080 Query 77805 TTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGA-C 77863 || |||| | || || || || |||||||| || |||| | ||| | ||| | | Sbjct 71079 TTGTAAACTAGGAATGGCGTTCCAGTTTCAATTTGGGATTGTAGAATGGCGAACCATAAC 71020 Query 77864 GACTCTAGCTTTTATCATAGATTTG---TATCGCCTCTCTCTTTCATATTGAGTATATAG 77920 || | | || || ||| |||| || || | | | ||||| | | || || Sbjct 71019 GATTGT-GCCTTGATCTG---TTTGACATAACGACCTTGATTCTCATACTTTATGTACAG 70964 Query 77921 CCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAA 77980 | |||||| || | ||| || || | |||||| ||| | || ||||| || Sbjct 70963 CTCTTCAAACTCTTTTCCATAAGAGGTGTCAAGTCCAGGACATAAGTGAGGACACATTAA 70904 Query 77981 TGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 78040 ||| ||||||| | |||| || ||| || || || | |||||||||||| | Sbjct 70903 ACTCCAAGCACCATCAGATTGTACTCTTTCCATGAATAGGTCGGATATCCATAGAGCTAG 70844 Query 78041 AAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTC 78100 ||||| |||| | ||| |||||||| || || ||||| || || | ||| || Sbjct 70843 AAATAAGTCTCTTGCTCTCTGTTCTTCTTTACCATGGTTCTTCCGGAGTTCAATAAAGTC 70784 Query 78101 CATAATATCAGAATGCCATGGTTCTAGATATATTGC-CATAACTCCAGGTCGTTTATTAC 78159 | | ||||| ||||||||| || | || ||||| || | || | ||||| || Sbjct 70783 GAACACATCAGCATGCCATGGCTCCAAGTAGATTGCGAATGAGCCCTTG-CGTTTGCCAC 70725 Query 78160 CTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGT 78219 |||| || |||| ||| | || || ||| ||||||| | ||||||||| || |||| Sbjct 70724 CTCCTTGGTCTACATAGCGAGCACAGTCATTGAAAACTCTGAGCATTGGAATGATTCCGT 70665 Query 78220 TAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATA 78279 | | | ||||||| ||||| | ||| ||| |||| | || | | ||| || | | Sbjct 70664 TCGCTCTTCCATTGGTTCCCGCAATGTAAGTTCCTGTAGCCCTGACTTTATGAACTGCAA 70605 Query 78280 TCCCTATTCCTCCTGCCATCTTAGAT-ATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 ||| || ||||||| ||| || | | || || ||||| ||| ||||| || | ||| Sbjct 70604 GCCCAATACCTCCTG-CATATTTGCTGATGAGTGCGCATGATTTTAATGTCTCAAATATA 70546 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACA 78398 || | ||||| || || ||| | ||||| |||||| ||||| ||| | | Sbjct 70545 CCTGCGATACTATCCTCTGCCATTTGCAGAAGGAAACAGGAGGACATCTGAGGTCTTGCC 70486 Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || |||||||| || || || || | ||||| ||||| | |||| | | ||| | | Sbjct 70485 GTCCCTGCATTGAACAAGGTAGGGGTAGCATGAGTAAAGAACTTTTGTGTCATTAGCTCG 70426 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || | || || | ||| | ||||| ||| || || ||||| | || ||| Sbjct 70425 TAACTCTCTCTAACACTTTCCAAGTCCCCACAATGGATACCACAAGCTACCCTCAAGAAC 70366 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTA-TTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||||| || |||||||| | | | | | || ||| | || |||||| | |||| || Sbjct 70365 ATATGTTGGGGTCTTTCTA-CAACACGTGAGTTGATTCTTAATAAGTATCCTCTTTCTAA 70307 Query 78578 AGTTTTAAAACCAAAATAGT 78597 || || || ||||||||| Sbjct 70306 TGTCTTGAACGCAAAATAGT 70287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694664727504160