Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq9 206 4e-48 >seq9 Length=285593 Score = 206 bits (228), Expect = 4e-48 Identities = 602/920 (65%), Gaps = 14/920 (2%) Strand=Plus/Minus Query 76280 GATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCAT 76339 || || || || || || |||| ||||| || || ||| | | ||| || ||||| Sbjct 71199 GAAGCGAGGTTGCATACAGCTATCTCATCAGGTGCGGTATACTCCACTATTTCAGTGCAG 71140 Query 76340 AGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCC 76399 ||||| || | | ||||| || | ||||| |||||||| ||| |||| || | |||| Sbjct 71139 AGATTGCTTGATTGAATAGTACCCAAATTTTTCTGGTTGCTTTTTCTGTTGCACGCGTCC 71080 Query 76400 TTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGA-C 76458 || |||| | || || |||||||||||||| || |||| | ||| | ||| | | Sbjct 71079 TTGTAAACTAGGAATGGCGTTCCAGTTTCAATTTGGGATTGTAGAATGGCGAACCATAAC 71020 Query 76459 GACTCTAGCTTTTATTATAGATTTG---TATCG--CTTCTCTCTTTCATATTGTGTATAT 76513 || | | ||| || |||| || || ||| ||| |||| | | | || Sbjct 71019 GATTGTGCCTTG----ATCTGTTTGACATAACGACCTTGATTCT--CATACTTTATGTAC 70966 Query 76514 AACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATC 76573 | | |||||| || | ||| || || | ||||||||| | |||||||| Sbjct 70965 AGCTCTTCAAACTCTTTTCCATAAGAGGTGTCAAGTCCAGGACATAAGTGAGGACACATT 70906 Query 76574 AATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCA 76633 || ||| ||||||| | || | || ||| || || || | |||||||||||| Sbjct 70905 AAACTCCAAGCACCATCAGATTGTACTCTTTCCATGAATAGGTCGGATATCCATAGAGCT 70846 Query 76634 ATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAAC 76693 | ||||| |||| | ||| ||||||| || || ||||| || || | || Sbjct 70845 AGAAATAAGTCTCTTGCTCTCTGTTCTTCTTTACCATGGTTCTTCCGGAGTTCAATAAAG 70786 Query 76694 TCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTA 76753 || | | ||||| ||||||||| || | || || || | ||| ||||| | Sbjct 70785 TCGAACACATCAGCATGCCATGGCTCCAAGTAGATTGCGAATGAGCCCTTGCGTTTGCCA 70726 Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || |||| ||| | ||| || ||| ||||||| | ||||||||| || ||| Sbjct 70725 CCTCCTTGGTCTACATAGCGAGCACAGTCATTGAAAACTCTGAGCATTGGAATGATTCCG 70666 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || | | | ||||| ||||| | ||| ||| |||| || | | ||| || | Sbjct 70665 TTCGCTCTTCCATTGGTTCCCGCAATGTAAGTTCCTGTAGCCCTGACTTTATGAACTGCA 70606 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 || || || |||||||| ||| ||| || || || ||| ||||| ||| | || Sbjct 70605 AGCCCAATACCTCCTGCATATTTGCTGATGAGTGCGCATGATTTTAATGTCTCAAATATA 70546 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACA 76993 || | |||||||| || ||| | ||||| |||||| ||||| ||| | | Sbjct 70545 CCTGCGATACTATCCTCTGCCATTTGCAGAAGGAAACAGGAGGACATCTGAGGTCTTGCC 70486 Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || |||||||| ||||| ||||| | |||||||| || | |||| | | ||| | | Sbjct 70485 GTCCCTGCATTGAACAAGGTAGGGGTAGCATGAGTAAAGAACTTTTGTGTCATTAGCTCG 70426 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || | || |||| ||| | |||| ||| || || ||| || | || ||| Sbjct 70425 TAACTCTCTCTAACACTTTCCAAGTCCCCACAATGGATACCACAAGCTACCCTCAAGAAC 70366 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTA-TTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||||| || |||| ||||||| | | | || ||| | || |||||| | |||| || Sbjct 70365 ATATGTTGGGGTCTTTCTACA-ACACGTGAGTTGATTCTTAATAAGTATCCTCTTTCTAA 70307 Query 77173 AGTTTTAAAACCAAAATAGT 77192 || || || ||||||||| Sbjct 70306 TGTCTTGAACGCAAAATAGT 70287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712930220422080