Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq19 176 9e-39 seq1 150 4e-31 >seq19 Length=197207 Score = 176 bits (194), Expect = 9e-39 Identities = 165/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 || ||||| | ||||||||||| ||||||||||| || || | || || || || || Sbjct 101810 ACGAGATGAATAGTGCTTTCTTTCTGGATGTTGTAATCGGCTAATGTCCGACCCTCATCC 101869 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 ||||| || || || || |||| ||| |||||||| |||||||| || |||||||| Sbjct 101870 AGTTGCTTACCAGCGAAAATCAGACGCTGTTGGTCCGGGGGAATACCTTCTTTGTCTTGA 101929 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| || || |||||||||| || ||||| | ||||||||||||||| |||||||| Sbjct 101930 ATCTTGGCCTTAACGGTATCGACAGAGTCCGTTGGTTCGACTTCGAGAGTAATCGTCTTG 101989 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| || || ||||| || |||||| Sbjct 101990 CCAGTCAAGGTTTTGACGAAGATTTGCATT 102019 Score = 140 bits (154), Expect = 7e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 282885 CGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCA 282944 || || || || || ||||| |||||||| ||||| || || || | | ||| | || Sbjct 102260 CGCAGCACAAGGTGCAACGTACTTTCTTTCTGGATATTATAATCCGATAACGTCCTACCC 102319 Query 282945 TCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTG 283004 ||||| | ||| || || ||||| |||| ||| || || ||| || || || |||||| Sbjct 102320 TCCTCCAATTGCTTACCAGCAAAAATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTTG 102379 Query 283005 TCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 || || ||||| || || || ||||| | || |||| || ||| || || ||||| ||| Sbjct 102380 TCATGAATCTTAGCCTTCACCGTATCAACAGAATCCGTAGGTTCCACCTCCAGAGTAATC 102439 Query 283065 GTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || ||||||||||| || |||||||| Sbjct 102440 GTCTTCCCAGTTAAAGTCTTAACAAAGATCTGCAT 102474 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || || || || || || | |||||||| || || |||||||| || | Sbjct 102020 CCACCTCTCAAACGGAGCACAAGGTGCAGTGTGCTTTCCTTCTGAATGTTGTAATCGGAC 102079 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||| | || || || || ||||| || || || |||| ||| ||||| ||| || Sbjct 102080 AACGTTCTACCTTCATCGAGCTGTTTGCCCGCGAAAATCAGACGCTGTTGATCAGGAGGG 102139 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| || ||||| || || || || || ||||||| | || ||| Sbjct 102140 ATGCCTTCCTTGTCCTGAATCTTGGCCTTAACAACGTCAATCGTGTCCGTGGGCTCCACT 102199 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || || ||||||||||| || || ||||| || || ||||||||| Sbjct 102200 TCCAGGGTAATCGTCTTACCAGTTAACGTCTTGACAAAGATCTGCATT 102247 >seq1 Length=711979 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||||||||| || | ||| ||||||||||| || | |||||| ||||| || Sbjct 179594 TCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCATCCAATTGTTTGCCGGCGAAT 179653 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || ||||| || ||||| || ||||| || || ||||| || || ||||| Sbjct 179654 ATCAAGCGCTGTTGATCCGGAGGAATGCCTTCCTTATCCTGAATCTTGGCCTTAACGGTC 179713 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||||| ||| | | || || || || || | ||||||||||||| |||||| ||| Sbjct 179714 TCGATAGAGTCGGTGGGCTCAACCTCCAGCGTCAAGGTCTTACCCGTCAGAGTCTTGACG 179773 Query 283089 AATATCTGCAT 283099 ||||||||||| Sbjct 179774 AATATCTGCAT 179784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046732910078726