Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq19 122 6e-23 seq1 118 8e-22 >seq19 Length=197207 Score = 122 bits (134), Expect = 6e-23 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 ||||| || |||||||||||||| || || |||| ||||| || || ||||||||||| Sbjct 101787 TTTCA--CCTCCTCTCAGTCTCAAGACGAGATGAATAGTGCTTTCTTTCTGGATGTTGTA 101844 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||||| | | || | || ||||| ||||| || || || |||| |||||| || || Sbjct 101845 ATCGGCTAATGTCCGACCCTCATCCAGTTGCTTACCAGCGAAAATCAGACGCTGTTGGTC 101904 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | |||||| || || ||||| ||| | || | | | ||| | | Sbjct 101905 CGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGGTATCGACAGAGTCCGTTGG 101964 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | ||||||||||| || || | ||| || |||||||||||||| Sbjct 101965 TTCGACTTCGAGAGTAATCGTCTTGCCAGTCAAGGTTTTGACGAAGATTTGCAT 102018 Score = 122 bits (134), Expect = 6e-23 Identities = 172/238 (72%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||||| | | ||| ||||| || ||||| ||||| || |||||||| Sbjct 102013 TTGCATTCCACCTCTCAAACGGAGCACAAGGTGCAGTGTGCTTTCCTTCTGAATGTTGTA 102072 Query 44164 ATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 ||||| | ||| | | || || ||||| || || || || |||| |||||| ||| Sbjct 102073 ATCGGACAACGTT--CTACCTTCATCGAGCTGTTTGCCCGCGAAAATCAGACGCTGTTGA 102130 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGG 44279 || | ||| | |||||||| ||| ||||| ||| ||| || | || ||||| | Sbjct 102131 TCAGGAGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTAACAACGT--CAATCGTGTCCG 102188 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| |||| ||||||||||| || || | ||||| || ||||| ||||| Sbjct 102189 TGGGCTCCACTTCCAGGGTAATCGTCTTACCAGTTAACGTCTTGACAAAGATCTGCAT 102246 Score = 109 bits (120), Expect = 4e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||||| | || ||| ||||| | ||| || || || ||||| || ||||| Sbjct 102244 CATTCCTCCTCTCAAACGCAGCACAAGGTGCAACGTACTTTCTTTCTGGATATTATAATC 102303 Query 44167 GGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 ||| | || | || |||| ||||| || ||||| |||| |||||||||||| Sbjct 102304 --CGATAACGTCCTACCCTCCTCCAATTGCTTACCAGCAAAAATCAGACGCTGCTGATCA 102361 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | ||| | |||||||| || ||||| ||||| || | | | || | | | Sbjct 102362 GGAGGGATGCCTTCCTTGTCATGAATCTTAGCCTTCACCGTATCAACAGAATCCGTAGGT 102421 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||| ||||||||||| || || | ||||| || ||||| ||||| Sbjct 102422 TCCACCTCCAGAGTAATCGTCTTCCCAGTTAAAGTCTTAACAAAGATCTGCAT 102474 >seq1 Length=711979 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||| ||||| | || ||||| | || |||||| |||||||||||||| | Sbjct 179558 CCGCCTCTGAGTCTGAGGACAAGGTGGATGGTAGACTCCTTCTGGATGTTGTAATCCGAA 179617 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || |||| || || ||||| || ||||| ||||| ||||| | ||| Sbjct 179618 AGAGTGCGGCCATCATCCAATTGTTTGCCGGCGAATATCAAGCGCTGTTGATCCGGAGGA 179677 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||| ||| | || | || | ||||| || || ||| Sbjct 179678 ATGCCTTCCTTATCCTGAATCTTGGCCTTAACGGTCTCGATAGAGTCGGTGGGCTCAACC 179737 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| ||| | ||||| ||||| || ||||| ||||| || |||||| Sbjct 179738 TCCAGCGTCAAGGTCTTACCCGTCAGAGTCTTGACGAATATCTGCATG 179785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988342317373