Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq19 136 4e-27 seq1 131 2e-25 >seq19 Length=197207 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| | ||| || ||||| ||||| |||||||||||||| || ||||| | || | | Sbjct 102031 ACGGAGCACAAGGTGCAGTGTGCTTTCCTTCTGAATGTTGTAATCGGACAACGTTCTACC 102090 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || |||||||| ||||| ||||| ||||| |||||||| || | || | || ||||| Sbjct 102091 TTCATCGAGCTGTTTGCCCGCGAAAATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTT 102150 Query 41767 GTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTA 41825 |||| ||| | || || | ||| ||| | | ||||| | | |||||| |||| || | Sbjct 102151 GTCC-TGAATCTTGGCCTTAACAACGTCAATCGTGTCCGTGGGCTCCACTTCCAGGGTAA 102209 Query 41826 TCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||||| || | |||||| || || |||||||| Sbjct 102210 TCGTCTTACCAGTTAACGTCTTGACAAAGATCTGCAT 102246 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 || || ||||| | ||||| || ||||| ||||| || |||| | || || | || Sbjct 101807 AAGACGAGATGAATAGTGCTTTCTTTCTGGATGTTGTAATCGGCTAATGTCCGACCCTCA 101866 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || || ||||| || ||||| ||||| ||||||||||||| ||||| | || |||| | Sbjct 101867 TCCAGTTGCTTACCAGCGAAAATCAGACGCTGTTGGTCCGGGGGAATACCTTCTTTGT-C 101925 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| | || || | |||| | |||| ||| | | || || || | || ||||| Sbjct 101926 TTGAATCTTGGCCTTAACGGTATCGACAGAGTCCGTTGGTTCGACTTCGAGAGTAATCGT 101985 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || |||| || || ||||| || ||||| Sbjct 101986 CTTGCCAGTCAAGGTTTTGACGAAGATTTGCAT 102018 >seq1 Length=711979 Score = 131 bits (144), Expect = 2e-25 Identities = 147/194 (76%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| || || || || ||||| | || || | || ||||||||||| Sbjct 179593 CTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCATCCAATTGTTTGCCGGCGAA 179652 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-G 41789 ||||| ||||||||| |||| |||| || ||||| ||| ||| | || || | ||| | Sbjct 179653 TATCAAGCGCTGTTGATCCGGAGGAATGCCTTCCTTATCC-TGAATCTTGGCCTTAACGG 179711 Query 41790 ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | || |||| | | ||| ||||||| ||| | || ||||||||||| ||||| | Sbjct 179712 TCTCGATAGAGTCGGTGGGCTCAACCTCCAGCGTCAAGGTCTTACCCGTCAGAGTCTTGA 179771 Query 41850 CGAAAATCTGCATG 41863 |||| ||||||||| Sbjct 179772 CGAATATCTGCATG 179785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301289742800