Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq23 120 6e-22 seq132 87.8 4e-12 seq263 84.2 5e-11 >seq23 Length=57594 Score = 120 bits (132), Expect = 6e-22 Identities = 230/334 (69%), Gaps = 4/334 (1%) Strand=Plus/Plus Query 61101 TCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACTCCGTTTTATCCT 61160 |||||| | | ||||| ||| |||||||||||||| | |||| ||||| |||| ||| Sbjct 43854 TCTGAATTATTTGGAAGAGTACAAGAAATTCCTCAGAATGAAAATACTCCTTTTTTTCCC 43913 Query 61161 CGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAAAAATTACCGCGAG 61220 | || |||| | |||| |||| ||| || | | ||| || ||||| | || Sbjct 43914 ATTTCTCCTTATGCTATTGCTAAACAATATGCACATTTCATTACTATCAATTATAGAGAA 43973 Query 61221 TCGTATGGAATGTTTGTATGTAACTCG-ATTTGTTTCAATCACGAGAGTCCCAATAGAGG 61279 || || |||||| | ||| | | | |||| || ||||| || ||||| | ||||| Sbjct 43974 TCATACAATATGTTT-TGTGTTAATGGTATTTTATTTAATCATGAAAGTCCTAGAAGAGG 44032 Query 61280 TCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATTTTTAACGGTGTCGA 61339 | ||||| ||||| |||||||| || | | || || |||| ||| | | || Sbjct 44033 AGAAACTTTTGTTACTCGAAAAATTACAAAAGGAATAGCCAAAATTTGTAAAAATATAGA 44092 Query 61340 AAAATGCATGTATCTAGGAAACATAGACTCTAAA-AGAGATTGGGGATATGCGGAAGATT 61398 ||| || || | ||||||| ||||| | || | |||||||||||| | || |||||| Sbjct 44093 AAAGTGTATTACTTTAGGAAATATAGA-TGTATATAGAGATTGGGGACACGCTAAAGATT 44151 Query 61399 ATATCGAGGCTATGTGGTTGATGTTGCAACAAGA 61432 || | | || |||| | ||| | |||||||| Sbjct 44152 ATGTACATGCGATGTATCTAATGCTTCAACAAGA 44185 >seq132 Length=31659 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 8158 TAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCAGGGGTTCGAGCCCC 8103 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||| | ||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 6152 TGCCTCTTTAGCTCAGTTGGTAGAGCGCCAGACTTTTAATCTGGTGGTCAGGGGTTCGAG 6211 Query 165769 CCCC 165772 ||| Sbjct 6212 TCCC 6215 >seq263 Length=22176 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||| | ||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 9508 TGCCTCTTTAGCTCAGTTGGTAGAGCGCCAGACTTTTAATCTGGTGGTCAGGGGTTCGAG 9449 Query 165769 CCCC 165772 ||| Sbjct 9448 TCCC 9445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057783570297290