Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq64 156 4e-33 >seq64 Length=40286 Score = 156 bits (172), Expect = 4e-33 Identities = 553/849 (65%), Gaps = 15/849 (2%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| ||||| ||| | |||||| ||||| || |||||||| | |||||| ||| | Sbjct 17104 TTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGAAATAAGAT 17045 Query 15972 CCATAAAATCAAAGGGATTAGTAGC-TGAAAATATCTTAGAGTACCCCAG---TTCCGTA 16027 |||| || ||| || || | || |||||| | || ||| | || | ||| || Sbjct 17044 CCATCCAACTAAATGGGTTTTTGGCATGAAAAACTTTT-GAGCAGCCTAAACATTC--TA 16988 Query 16028 ACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATA 16087 | || || ||| || |||||||| |||||||| ||||||| | |||| ||||| ||| Sbjct 16987 A-TAGTCGATCAGCAACAAATTCAATATATTGTGACATTAATCTGGAATTCATTCCAATA 16929 Query 16088 AG-TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAAT 16146 || || | | || | || | |||| | ||||| | || |||||||||| Sbjct 16928 AGATCACATGGTAAT-GATTCGCAGATAAATGATCTTTCTACATCTACAGCTTCTTTAAC 16870 Query 16147 GATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGC 16206 |||| || | |||| | | ||| | || || |||||| ||| Sbjct 16869 TATATTATGTACTACTTTTTCGGGTAATTTATTTTCTAATAAACTATACATTAAACAATT 16810 Query 16207 GAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGG 16266 || || || | |||||| ||||| ||||| | ||| || |||||| | || | Sbjct 16809 AAAATCTGTGTGCAATCCTTCATCTCTACTGATCAATTCATTACTAAAAGTGAGTCCATG 16750 Query 16267 CATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACC 16326 |||||| | |||| || |||||||| || ||| ||| || ||| | ||||| Sbjct 16749 CATTTTGTTTTGTTTTTTGAACCAGAAGATTGCACAAAAACTTCCACTAAATAGAATACC 16690 Query 16327 CTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCA 16386 |||||| | ||| || | | || ||| || | | || || | | | |||||| Sbjct 16689 TTCAACACAAGCATTGGCAACAATTCTTTCAGCAAAAG-AGT-TCGTG-TCATTAATCCA 16633 Query 16387 TTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAA 16446 ||| | ||||| ||||| | ||||| | | || |||| || || | ||| || Sbjct 16632 TTTAGCTGCCCATAATGCTTTGTTTTTTACAGCAGGTATATTTTCAATAGCATGAAATAA 16573 Query 16447 TTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGA 16506 || | |||| ||| | ||||| ||||||||| |||||||| ||||||| Sbjct 16572 ATTTAATCTTTCAGCTTCATCTTTAATATAATTATCAATCAACAAACTGTAAGTTTCTGA 16513 Query 16507 GTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTAC 16566 || || || |||| ||||||||||| ||| || | || || || |||||||| Sbjct 16512 ATGGATATTTTCTACAGCTATCTGAAAAGAATAAAACTTTTTTGCTTCAGCAATTTGTAC 16453 Query 16567 TTCCACGTAAAATCGTTC-CGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAA 16625 || | | |||| | | | | | || || ||| || || ||||| || ||||||| Sbjct 16452 TT-CTCTCAAAAACTTACAAGATAAATTTTCTAACACAATTCCATCACTAGCTGCAAAAA 16394 Query 16626 ACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTA 16685 | ||||| | || || ||||||| ||| || | | | | | | | ||||||||| Sbjct 16393 ATGCCAACACATGGTTTATGAAATGTTTCTCATTGTCTTTTAAAGTTTCATAATCTTTTA 16334 Query 16686 AATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACA 16745 |||| | || | ||| | |||||| | |||||||| ||| |||| |||||||| | Sbjct 16333 AATCACTAGACAAATCAATTTCTTCAGCAGTCCAAAAAGAAGCTTCTGCTTTTTTATAAA 16274 Query 16746 TTTTCCAAA 16754 | ||||| Sbjct 16273 AATCCCAAA 16265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511395330635560