Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq67 114 1e-20 >seq67 Length=41086 Score = 114 bits (126), Expect = 1e-20 Identities = 273/409 (67%), Gaps = 8/409 (2%) Strand=Plus/Plus Query 18798 GGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCA 18857 || ||||| || || || ||||||||||||||||| || ||||||| || || Sbjct 28542 GGACCCATATATGGATTTCAGTGGAGACATTTTGGTGCAGAATATACGAACATGCATGAT 28601 Query 18858 AACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAAC 18917 | ||| | | |||| | ||||| | ||| ||| || ||| |||||||| | Sbjct 28602 GATTATACAAATAAAGGTGTTGATCAATTAAAAAATGTAATTGATTTAATTAAAAATGAT 28661 Query 18918 CCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTA 18977 || | | || |||| || ||| | |||||||| || ||| | ||||| | Sbjct 28662 CCTAAGAATAGAAGAATTATATTATGTGCATGGAATCCTAAAGATTTAGAAAAAATGGCA 28721 Query 18978 CTACCTCCATGTCACACGTTATGTCAGTTTTA---CGTTGCAAACGGTGAATTATCCTGC 19034 ||||||| ||||| |||||||||||||| ||| ||| | |||| ||||| Sbjct 28722 TTACCTCCCTGTCATGTATTATGTCAGTTTTATATTTTTGAAAA---TAAATTGTCCTGT 28778 Query 19035 CAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATAT 19094 | | || || ||||| | ||| ||||| | || ||||| || ||||||||| ||| Sbjct 28779 ATAATGTATCAAAGATCTTGTGATTTGGGCTTAGGAGTACCTTTTAACATTGCTTCCTAT 28838 Query 19095 GCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGA-GATTTAATTCA 19153 | || |||| |||| |||| || ||| | |||| || | || || || || Sbjct 28839 TCTATTTTTACTCACATGATAGCCCAAGTT-TGTAATTTAATTCCATATGAATTTATCCA 28897 Query 19154 TACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAA 19202 || | | || ||||||||||||| |||||||| | ||| |||||| Sbjct 28898 TATATTAGGAAATGCACATATTTATATGAATCATGTTGATCAGTTAAAA 28946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399489475907235