Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq67 250 2e-61 >seq67 Length=41086 Score = 250 bits (276), Expect = 2e-61 Identities = 514/756 (68%), Gaps = 19/756 (3%) Strand=Plus/Minus Query 101528 TTTTC--TTAAACAGCCATATGCATTTTAAT--TAT-AGGGTGTGGGTTATAGTTTTCTA 101582 ||||| |||| ||||||| |||| ||| ||| | ||||| ||| || |||| Sbjct 29097 TTTTCATTTAAGCAGCCATTGGCATGACAATCTTATCATGGTGTAC---ATAATTCTCTA 29041 Query 101583 ATATAATGTCATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTG 101642 | |||| || ||| | |||| || |||||| | ||||| | ||| | || | Sbjct 29040 TTTTAATATCGTCTACAGTAAAATCTTCAATGTTTTGCACATTCGGATTTAATTTGAGAG 28981 Query 101643 TTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACAT 101702 ||||||| || ||| |||| | | || |||| | ||||| |||| | || Sbjct 28980 TTGGAAAAGGATAGGGAATTCGATTAATTTGTTTTTTTAACTGATCAACATGATTCATAT 28921 Query 101703 AGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAG 101762 | || || |||| ||||| |||||||||| || || | || |||| || || | Sbjct 28920 AAATATGTGCATTTCCTAATATATGGATAAATTCATATGGAATTAAATTACAAACTTGGG 28861 Query 101763 CAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATAT 101822 | |||||| ||| |||| ||||||| |||||||||||| || |||||||| |||| || Sbjct 28860 CTATCATGTGAGTAAAAATAGAATAGGAAGCAATGTTAAAAGGTACTCCTAAGCCCAAAT 28801 Query 101823 CAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTA 101882 || ||||||||||||| | |||||| | || ||| | | |||||| |||| || Sbjct 28800 CACAAGATCTTTGATACATTATACAGGACAATTTATTTTCAAAAATATAAAACTGACATA 28741 Query 101883 ATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTA 101942 |||||||||| || || || ||||||| | ||| | |||||| ||||| | || Sbjct 28740 ATACATGACAGGGAGGTAATGCCATTTTTTCTAAATCTTTAGGATTCCATGCACATAATA 28681 Query 101943 ACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAA 102002 || ||||||| |||| | |||| || |||||| | | ||||||||| |||| Sbjct 28680 TAATTCTTCTATTCTTAGGATCATTTTTAATTAAATCAATTACATTTTTTAATTGATCAA 28621 Query 102003 CTCCTTCTCCTTTATAATCGCGCCCAACACCTT--TATATTCTGCTCCGAAATGCCTCCA 102060 | |||| | |||||| | | || || |||||||||| || ||||| ||||| Sbjct 28620 CACCTTTATTTGTATAAT--CATCATGCATGTTCGTATATTCTGCACCAAAATGTCTCCA 28563 Query 102061 CTGAAATCCATACACAGGTCCAAGATCTCCTTCA--TCTCTGTCATAAAAACCAAGTTTA 102118 |||||||||||| | ||||| | | || |||| || |||||| | ||| |||| Sbjct 28562 CTGAAATCCATATATGGGTCCTAAA--TCATTCACTTCCCTGTCAAATAAATTTCGTTTG 28505 Query 102119 TCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCT 102178 ||||||||| || | |||||| || ||||| || |||| || | | Sbjct 28504 TCTAAAAATTCCCTTGTTCCATTAGCTTCCCATATTCGCACATTTTTATCTAACAAAATA 28445 Query 102179 TTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAAT 102238 || | | || |||||| ||||||||||||| |||||| | | ||||| |||| Sbjct 28444 TTTCCATTTGTTTCTCCTCTTATAAACCACAACAATTCTTCTATGATGCCTCTTAAAAAC 28385 Query 102239 ACTCTCTTAGTAGTTAAAAGTGGAA---ATTCATTT 102271 | | |||| || ||||| | |||| |||||||| Sbjct 28384 AATTTCTTTGTCGTTAATAACGGAAAATATTCATTT 28349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361238066599733