Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq444 340 2e-88 seq64 199 5e-46 >seq444 Length=15175 Score = 340 bits (376), Expect = 2e-88 Identities = 1099/1695 (65%), Gaps = 32/1695 (2%) Strand=Plus/Plus Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||| || || ||||| || ||||||||||| | || || | |||||| |||||| Sbjct 4444 TGATCAATAAATGCTCCTCTATCTGCAGCCATATCAATAATATTTTTTTGTTTTATTTCC 4503 Query 53009 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT--TG-TATTCTGAATAGAT 53065 || | |||||| || | | ||| | ||| || || | | || ||| ||||| | | Sbjct 4504 CAGACAGTTTTGTACAATTCCTTTAAATCATCAGGTATTTCACTGATATACTGAACACTT 4563 Query 53066 CCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 53125 ||| | | || | | || || || |||| ||||| ||| || |||| Sbjct 4564 CCATTGTGAGCAATCAGTTGTTGTTTCATATCTTCATCCCATAGACCTCTATCAAATAAA 4623 Query 53126 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 53185 || | | ||||| ||||| ||||| ||||||||| |||||||| | ||| Sbjct 4624 TCTTTCAACAGATGTGGATTTACTACAAAGAATTCTCCACTTAATACTCTTCTGTAATAA 4683 Query 53186 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 53245 || || || || || ||||| | ||| ||||||||||| |||||||| | || || || Sbjct 4684 ATGTTGCTAGTGTATGGTTCAAAAGATTCATTATTTCCTAAAATTTGTGATGTAGAAGCC 4743 Query 53246 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 53305 || |||||||| || | |||||| |||||| | ||| | | | | ||||| | |||| Sbjct 4744 GTAGGCATAGGAGCTAATAATAAAGAATTTCTTAAACCATGTTTGATTATTTTTTGTTTT 4803 Query 53306 AGAGGTTCCCAATTCCAAAGATCCGACGGTACA---ACNNNNNNNNNNNNNNNTTGTAGA 53362 | ||||| |||||| | ||| || || | | Sbjct 4804 AATTCATCCCAGTTCCAATATTTATTATCTACTTTTACATTCCACATGTCAAACTGCAAA 4863 Query 53363 ATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGT 53422 ||||| || || || |||| | |||| || || | ||| | || ||| | | Sbjct 4864 ATACCTTTGCTTGCTGGGCTTCCTTTAAATGTTTCATAGGTTCCATGAACCTTAGCCAAT 4923 Query 53423 TC-ACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 53481 || || | | || || || | |||| || ||||| || || | || || | || Sbjct 4924 TCTACGGATT-CTTCCAAAGCTGCAAAATACATAGTTTCAAAAATTCTTTTGTTCAATTC 4982 Query 53482 TTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 53541 || || || ||| ||||||| | || | || || | ||| || |||||||| Sbjct 4983 TTTGGCATCGTCCGATTCATATGGATATCTCAATAACATGAAGGTGTCAGCCAATCCTTG 5042 Query 53542 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 53601 ||||||||| || || |||||||||| | ||| || | || |||||| || ||||| Sbjct 5043 AACACCAATTCCAATTGGTCTATGTCGATGATTTGAAACTTTGGCTTCTTTAACTGGATA 5102 Query 53602 ATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAG 53661 |||||| | ||||| ||||||| | ||||| ||| | | || | ||| | || Sbjct 5103 ATAATTTCTTTCTATTATTTTATCTAAATTTCTTGTAATAATTCTGGTAATATCATAAAG 5162 Query 53662 TTTGAGAAAATCAAATTGTC---CATCTAT---TACAAACATGTTCAATGCAATAGATGC 53715 ||| ||||||||||||| || || |||||| | || |||||||| || Sbjct 5163 TTTTTTGAAATCAAATTGTCTTTTTTCCATATCTACAAATTTACATAAGGCAATAGAAGC 5222 Query 53716 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 53775 | ||| ||||||||||| || | | | ||||| || || || ||| | ||| Sbjct 5223 TAAATTGCAAACGGCTACTTCCCCTGGAGATGTATATTCTACAATTTCGCAGCATAAATT 5282 Query 53776 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 53835 ||||| || || ||||| || ||||||||||| || |||||| ||||| ||||| Sbjct 5283 GCTACATTTAATAGTTCCCAAGTTTTGTTGATTGGATTTGGAGTTACAAGCATCTTTATA 5342 Query 53836 AAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACG 53895 | || |||| || || ||||| || || || || ||| || ||| | | | Sbjct 5343 TAACATATATGGGGTTCCTGTTTCTATTTGACTTTGTAAAATGGCAAACCATAAATCTTG 5402 Query 53896 AGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAA 53955 ||| || | | ||| | |||| ||| ||| ||| || ||| |||||| Sbjct 5403 AGCTGGTACTGTTCTTTTTCCTAATCCTTCTTCTTCATATTTTGTGTATAATTTTTCAAA 5462 Query 53956 CTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTC 54015 || |||||||| | ||| ||||||||||| | |||||||| || | ||| || Sbjct 5463 TTCTTCTCCCCAGGTTTCACTCAAACCAGGACATTCGTTAGGACACATTAAAGTCCATTC 5522 Query 54016 TCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 54075 | | || || |||| |||||||||||||||||||||||| ||||| ||||| ||| Sbjct 5523 TTTATTTTCTTTTACTCTTTTCATAAAGAGATCAGGAATCCAGAGAGCATAAAATAAATC 5582 Query 54076 TCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 54135 ||| | ||| ||| || ||||| || ||| | | ||| | || | | | ||| Sbjct 5583 TCTTGCTCTTAATTCTTCTTTTCCGTGGTTTTTTCTCAAATCTAAAAATTCAAATACATC 5642 Query 54136 AGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTT-TGTTTCCTCCC---T 54191 |||||||||||||| | || || | || || | | || | ||||| ||| | Sbjct 5643 TGAATGCCACGGTTCAATATAAATTG-CAAAA---GAACCTTTTCTTTTTCCGCCCCCTT 5698 Query 54192 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 54251 |||||| |||||||| |||| |||| | ||||| ||||| || |||| |||||||| Sbjct 5699 GATCTACATATCTAGCAGTGTCATTAAACACTCTTAACATAGGTATAAGCCCATTGGAAT 5758 Query 54252 CACCATTGGTCCCGGAGATAT----AGCTTCCACTGGCACGAATATTACTAATTGATAGA 54307 || ||||| || || | | || || || || || | | || || | Sbjct 5759 TTCCGTTGGTTCCTCTAATGTAAGAATTTTGACCTCTTAC--ATCTTGC--ACTGCTACA 5814 Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 54367 || || || ||||| |||| || | ||| ||| | ||||| || ||| | || || Sbjct 5815 CCAATACCTCCTGCTGTTTTGCTAATCAGTGCACATTGCTTTAAAGTTTCAAAAATACCT 5874 Query 54368 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 54427 || || ||| | ||| | || ||| || ||||||||| | | |||| Sbjct 5875 TCAATGGAATCGGACTGAATGGACAATAAAAAGCAAGAAGACATTTGTGGTCTTGGAGTT 5934 Query 54428 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 54487 || | || || || || |||| ||| || ||||| |||||| || | | || || Sbjct 5935 CCGGAGTTGAACAAAGTCGGAGTAGCATGGGTAAAATATTTTTGGGACATCAAATGATAT 5994 Query 54488 GTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACAT 54546 || || | ||| || | ||| || || ||||| || | | || | ||| |||| Sbjct 5995 GTTTCCAATGCTCTATCAACATCATCAATG-TGAATACCAATAGAAACTCTCATCAACAA 6053 Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 || || ||||| || || || ||||| || ||| | ||| || ||| |||| ||||| Sbjct 6054 ATGTTGTGGTCTCTCTACTATTTTGTTATTAATTCGTAACAAATAAGATCTTTCTAAAGT 6113 Query 54607 TTTAAAACCAAAATA 54621 ||| ||||||||||| Sbjct 6114 TTTGAAACCAAAATA 6128 >seq64 Length=40286 Score = 199 bits (220), Expect = 5e-46 Identities = 590/895 (66%), Gaps = 30/895 (3%) Strand=Plus/Minus Query 23825 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 23884 ||| | ||||||||| |||||| || || | || | |||||| || ||||| ||||| Sbjct 17124 TTGTGCCATAACTCCTGATTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTT 17065 Query 23885 ACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTT 23944 |||| ||| || ||| ||||| || |||| || | ||| | | | ||||| Sbjct 17064 TCCTTGTAAAGAAATAAGATCCATCCAACTAAATGGGTTTTTGGCATGAAAAA--CTTTT 17007 Query 23945 AA--ATCCCAA---TTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATC 23999 | | || || ||| ||| | || ||| || ||||| || |||||| | ||| Sbjct 17006 GAGCAGCCTAAACATTCT--AAT-AGTCGATCAGCAACAAATTCAATATATTGTGACATT 16950 Query 24000 ATTTCACAATTCATTCCTATAAGTTTAACTGGAA--GAGCCACAGTAAGAAATTCTTGTT 24057 | | |||||||||| ||||| | | ||| | || | ||| | |||| | || Sbjct 16949 AATCTGGAATTCATTCCAATAAGATCACATGGTAATGATTCGCAG--ATAAATGATCTTT 16892 Query 24058 CAATAGAGACCGCGTCTGT---TATAATAGATCTTACTGTTTCT--TCACTCGGTGGATA 24112 | | | || || ||| | |||| || | |||| |||| | | | | || Sbjct 16891 CTACATCTACAGCTTCTTTAACTATATTATGTACTACTTTTTCGGGTAATTTATTTTCTA 16832 Query 24113 CAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAAT 24172 ||||| || |||| ||||| ||||| ||| | || || |||||||| || Sbjct 16831 --ATAAAC---TATACATTAAACAATTAAAATCTGTGTGCAATCCTTCATCTCTACTGAT 16777 Query 24173 TAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 24232 ||||| || ||| |||||||| ||||| | | ||||| | ||| || || | Sbjct 16776 CAATTCATTACTAAAAGTGAGTCCATGCATTTTGTTTTGTTTTTTGAACCAGAAGATTGC 16717 Query 24233 CGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC 24292 ||| |||| ||| | ||| ||||| || ||| ||||| || |||||| | Sbjct 16716 ACAAAAACTTCCACTAAATAGAATACCTTCAACACAAGCATTGGCAACAATTCTTTCAGC 16657 Query 24293 ATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 | || | |||||| ||||| || ||||| || || ||||||||| ||| Sbjct 16656 AAAAGAGTTCGTGTCATTAATCCATTTAGCTGCCCATAATGCTTTGTTTTTTACAGCAGG 16597 Query 24353 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 24412 || | || ||||||| ||| | || | ||||| |||||||| ||| |||| Sbjct 16596 TATATTTTCAATAGCATGAAATAAATTTAATCTTTCAGCTTCATCTTTAATATAATTATC 16537 Query 24413 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472 |||||| | ||| || |||| ||||| || ||||| | || || ||||| || || Sbjct 16536 AATCAACAAACTGTAAGTTTCTGAATGGATATTTTCTACAGCTATCTGAAAAGAATAAAA 16477 Query 24473 ACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT-GCTAAATTTTCATTCA 24531 | | || || | ||| ||||||||| | ||||| | | | | ||||||||| || Sbjct 16476 CTTTTTTGCTTCAGCAATTTGTACTTCTCT-CAAAAACTTACAAGATAAATTTTCTAACA 16418 Query 24532 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 24591 | ||||| ||||| ||||||||||| ||||| ||||| ||||| |||| ||| || | Sbjct 16417 CAATTCCATCACTAGCTGCAAAAAATGCCAACACATGGTTTATGAAATGTTTCTCATTGT 16358 Query 24592 GTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 24649 | || ||||| | |||| || | ||| |||| | ||| | |||||| | ||||| Sbjct 16357 CTTTTAAAGTTTCAT--AATCTTTTAAATCACTAGACAAATCAATTTCTTCAGCAGTCCA 16300 Query 24650 AAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 24704 ||| || || ||||| |||||||| | || ||| | || ||||| ||| ||| Sbjct 16299 AAAAGAAGCTTCTGCTTTTTTATAAAAATCCCAAACTTCCGGATATAAAATCGGA 16245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593699461605840