Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq483 122 7e-23 seq3 87.8 2e-12 >seq483 Length=14038 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | |||||||| ||||| ||||||||||| ||| ||| | || Sbjct 5937 ATGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTAGAATCATCA 5996 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||||| || |||||||| | || ||||||| Sbjct 5997 GATACTATTGAAAATGTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 6056 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | |||||||| || |||||| | |||||| | |||| | | |||||||| Sbjct 6057 CAAAGATTAATCTTTGCCGGAAAACAATTAGAAGATGGAAGAACTTTATCTGATTACAAC 6116 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| ||||| || | ||| | || ||| ||||| ||||||| Sbjct 6117 ATCCAGAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGG 6163 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | |||||||| ||||| ||||||||||| ||| |||| | || Sbjct 6165 ATGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTGGAATCATCA 6224 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||||| || |||||||| | || ||||||| Sbjct 6225 GACACTATTGAAAATGTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 6284 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | |||||||| || |||||| ||||||| | |||| | | |||||||| Sbjct 6285 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATCTGATTACAAC 6344 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || ||||| || | ||| | || ||| ||||| ||||||| Sbjct 6345 ATCCAAAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGG 6391 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || || || || |||||||||||| ||| |||| | || Sbjct 5709 ATGCAGATTTTCGTTAAGACCTTAACTGGAAAAACCATTACCTTGGAAGTGGAATCATCA 5768 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||||| || |||||||| | || ||||||| Sbjct 5769 GACACTATTGAAAATGTGAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 5828 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | |||||||| || |||||| ||||||| | |||| | ||||| || Sbjct 5829 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATTGGATTATAAC 5888 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| ||||| ||| | ||| | || ||| ||||| |||| || Sbjct 5889 ATCCAGAAAGAATCCACTTTACACTTAGTTTTAAGATTAAGAGGTGG 5935 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || ||||||||||||| | |||||||| || |||||| ||||| Sbjct 5574 GACAAAGAAGGAATTCCACCAGATCAACAAAGATTAATCTTTGCTGGAAAACAATTGGAA 5633 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || | |||| | | |||||||| || ||||| ||||| || | ||| | || ||| Sbjct 5634 GACGGAAGAACTTTATCTGATTACAACATCCAGAAAGAATCCACCTTACACTTAGTTTTA 5693 Query 29175 CGATTACGAGGAGG 29188 ||||| ||||||| Sbjct 5694 AGATTAAGAGGAGG 5707 >seq3 Length=82673 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 |||||||||||| || | || || || || || ||||| || ||| ||| ||| || Sbjct 24931 AAAAATGCAAATCTTTGTGAAGACGTTAACCGGTAAAACTATAACCCTTGAAGTGGAGCC 24872 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 || | | | || | || |||||| ||||| ||||| | || || Sbjct 24871 AAATGATATTATTGAAAATGTGAAAACCAAAATTCAAGATAAGGAAGGCATTCCTCCTGA 24812 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| || || | || ||||| || |||||| ||||||||||| ||| | | ||||| Sbjct 24811 TCAGCAGCGATTAATATTTGCTGGAAAACAATTGGAAGATTCCCGAACCCTTTCGGATTA 24752 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| || || |||||||| | ||| | || || ||||||||||||| Sbjct 24751 CAATATCCAAAAAGAATCTACGTTGCACTTAGTTTTGAGATTACGAGGAGG 24701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428320427710865