Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq67 224 7e-54 >seq67 Length=41086 Score = 224 bits (248), Expect = 7e-54 Identities = 436/638 (68%), Gaps = 8/638 (1%) Strand=Plus/Minus Query 96997 AACTTTAGTGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATG 97056 || || || ||||| ||||| |||| |||| ||| || | | | | ||||| Sbjct 28990 AATTTGAGAGTTGGAAAAGGATAGGGAATTCGATTAATTTGTTTTTTTAACTGATCAACA 28931 Query 97057 TGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCA 97116 ||||||| |||||| || |||| |||||| | || |||||||| |||| ||||| | Sbjct 28930 TGATTCATATAAATATGTGCATTTCCTAATATATGGATAAATTCATATGGAATTAAATTA 28871 Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 || ||||| ||||| ||| || | ||||||| ||||||||||||||| || ||| Sbjct 28870 CAAACTTGGGCTATCATGTGAGTAAAAATAGAATAGGAAGCAATGTTAAAAGGTACTCCT 28811 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 | |||| |||| ||||||||||| | |||||| | || ||| | | |||| Sbjct 28810 AAGCCCAAATCACAAGATCTTTGATACATTATACAGGACAATTTATTTTCAAAAATATAA 28751 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAA 97296 ||||||| |||||||||||||| || || ||||||||| | |||| |||||| Sbjct 28750 AACTGACATAATACATGACAGGGAGGTAATGCCATTTTTTCTAAATCTTTAGGATTCCAT 28691 Query 97297 GCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTT 97356 ||||| | | |||||||||| | || | | | || || ||||| | ||| Sbjct 28690 GCACATAATATAATTCTTCTATTCTTAGGATCATTTTTAATTAAATCAATTACATTTTTT 28631 Query 97357 AATTGATCAACGCCT---TCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCA 97413 ||||||||||| ||| | | | || || ||| | | | | ||||||||| ||| Sbjct 28630 AATTGATCAACACCTTTATTTGTATAATCATCATGC--ATGTTCGT-ATATTCTGCACCA 28574 Query 97414 AAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAA 97473 ||||| ||||| || |||||||| | ||||| | || |||| || ||| | ||| Sbjct 28573 AAATGTCTCCACTGAAATCCATATATGGGTCCTAAATCATTCACTTCCCTGTCAAATAAA 28514 Query 97474 CCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACA-CCAGATGC 97532 | || |||||| | ||| | |||||| || ||||| || ||||| || Sbjct 28513 TTTCGTTTGTCTAAAAATTCCCTTGTTCCATTAGCTTCCCATATTCGCACATTTTTATCT 28454 Query 97533 TGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACC 97592 ||| | ||| | | || |||||| |||||||||||||||||||| | | || Sbjct 28453 AACAAAATATTT-CCATTTGTTTCTCCTCTTATAAACCACAACAATTCTTCTATGATGCC 28395 Query 97593 TCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAAT 97630 ||| |||| | | |||| || ||||| | ||||||| Sbjct 28394 TCTTAAAAACAATTTCTTTGTCGTTAATAACGGAAAAT 28357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346771392559310