Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq67 293 4e-74 seq3 150 3e-31 seq483 145 1e-29 >seq67 Length=41086 Score = 293 bits (324), Expect = 4e-74 Identities = 461/654 (70%), Gaps = 7/654 (1%) Strand=Plus/Minus Query 205321 TTTATTTTTAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTA 205380 |||| ||| | ||||||| || | || | || | | |||||||||||| || | Sbjct 28993 TTTAATTTGAGAGTTGGAAAAGGATAGGGAATTCGATTAATTTGTTTTTTTAACTGATCA 28934 Query 205381 ATATGATTAACATATATATGTGCATTACC-AATATTATGAATAAATTCATATGGTTTTAA 205439 | |||||| | ||| ||||||||||| || ||||| ||| |||||||||||||| |||| Sbjct 28933 ACATGATTCATATAAATATGTGCATTTCCTAATAT-ATGGATAAATTCATATGGAATTAA 28875 Query 205440 ATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTAC 205499 |||| | || || ||||| | ||| || | | ||| ||||| ||||| ||||| Sbjct 28874 ATTACAAACTTGGGCTATCATGTGAGTAAAAATAGAATAGGAAGCAATGTTAAAAGGTAC 28815 Query 205500 ACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAAT 205559 ||||| |||| |||| ||||||||||||||| ||| | | ||||||| | || Sbjct 28814 TCCTAAGCCCAAATCACAAGATCTTTGATACATTATACAGGACA---ATTTATTTTCAAA 28758 Query 205560 TACATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAG 205618 | || ||| || ||| || | |||||| || |||| |||| ||||| | |||| ||| Sbjct 28757 AATATAAAACTG-ACATAATACATGACAGGGAGGTAATGCCATTTTTTCTAAATCTTTAG 28699 Query 205619 GATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAA 205678 ||||||| || |||||| || ||||| | ||| | |||||| ||| || || | Sbjct 28698 GATTCCATGCACATAATATAATTCTTCTATTCTTAGGATCATTTTTAATTAAATCAATTA 28639 Query 205679 TATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAG 205738 || | |||||||||||| |||| ||||||||||| || ||| | |||||| | Sbjct 28638 CATTTTTTAATTGATCAACACCTTTATTTGTATAATCATCATGCATGTTCGTATATTCTG 28579 Query 205739 CACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCAT 205798 |||||||||| | ||| ||||| ||||| | || ||||||||| ||| || ||| Sbjct 28578 CACCAAAATGTCTCCACTGAAATCCATATATGGGTCCTAAATCATTCACTTCCCTGTCAA 28519 Query 205799 TAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattcctt 205858 ||| ||||| | || | ||| || |||||| | ||||| || | | || Sbjct 28518 ATAAATTTCGTTTGTCTAAAAATTCCCTTGTTCCATTAGCTTCCCATATTCGCACATTTT 28459 Query 205859 tattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAA 205918 ||| | | ||||||| ||| ||| ||| ||||||||| || |||||||| | | Sbjct 28458 TATCTAACAAAATATTTCCATTTGTTTCTCCTCTTATAAACCACAACAATTCTTCTATGA 28399 Query 205919 TTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCATCTAATT 205972 | ||||| |||||| | ||||| || ||||| ||||| | |||| ||||| Sbjct 28398 TGCCTCTTAAAAACAATTTCTTTGTCGTTAATAACGGAAAATATTCATTTAATT 28345 >seq3 Length=82673 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| |||| || ||||||||||| | || | || |||| Sbjct 24928 AATGCAAATCTTTGTGAAGACGTTAACCGGTAAAACTATAACCCTTGAAGTGGAGCCAAA 24869 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | ||| |||||||||||||| ||||| || || |||||||| Sbjct 24868 TGATATTATTGAAAATGTGAAAACCAAAATTCAAGATAAGGAAGGCATTCCTCCTGATCA 24809 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | || ||||| ||||||||||| || ||| ||||| | ||||| || Sbjct 24808 GCAGCGATTAATATTTGCTGGAAAACAATTGGAAGATTCCCGAACCCTTTCGGATTACAA 24749 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||| ||||||||||| || ||||| || ||||| | |||||||| || Sbjct 24748 TATCCAAAAAGAATCTACGTTGCACTTAGTTTTGAGATTACGAGGAGG 24701 >seq483 Length=14038 Score = 145 bits (160), Expect = 1e-29 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| |||| || ||||| || || | || | ||| || Sbjct 5937 ATGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTAGAATCATCA 5996 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| |||| ||||| ||||| |||||||| || ||||| |||||| Sbjct 5997 GATACTATTGAAAATGTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 6056 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||| |||||||||||||| ||| | |||| ||| ||||| || Sbjct 6057 CAAAGATTAATCTTTGCCGGAAAACAATTAGAAGATGGAAGAACTTTATCTGATTACAAC 6116 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || |||||||| || || || || |||||| | ||| |||| ||||| ||| || Sbjct 6117 ATCCAGAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGGTATGCAAATTT 6174 Score = 136 bits (150), Expect = 6e-27 Identities = 173/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| |||| || ||||| || || | || | ||| || Sbjct 5709 ATGCAGATTTTCGTTAAGACCTTAACTGGAAAAACCATTACCTTGGAAGTGGAATCATCA 5768 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| ||||| |||||||| || ||||| |||||| Sbjct 5769 GACACTATTGAAAATGTGAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 5828 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||| ||||||||||| || || | |||| ||| |||||||| Sbjct 5829 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATTGGATTATAAC 5888 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || |||||||| ||||| || || |||||| | ||| |||||||||| ||| || Sbjct 5889 ATCCAGAAAGAATCCACTTTACACTTAGTTTTAAGATTAAGAGGTGGTATGCAAATTT 5946 Score = 134 bits (148), Expect = 2e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| |||| || ||||| || || | || | ||| || Sbjct 6165 ATGCAAATTTTCGTTAAAACATTAACGGGAAAAACCATTACATTGGAAGTGGAATCATCA 6224 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| |||| ||||| ||||| |||||||| || ||||| |||||| Sbjct 6225 GACACTATTGAAAATGTAAAGGCCAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 6284 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||| ||||||||||| || || | |||| ||| ||||| || Sbjct 6285 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGACGGAAGAACTTTATCTGATTACAAC 6344 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 || ||||||||||| || || || || |||||| | ||| |||| || ||| || Sbjct 6345 ATCCAAAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGGAATTTAA 6398 Score = 122 bits (134), Expect = 1e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 124564 CAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGA 124623 |||| || ||||| || | || |||| ||| ||| || ||| ||| | || | Sbjct 5506 CAGGTAAGACTATTACCTTGGAAGTTGAGGCATCTGACACTATTGAGAATGTGAAGGCCA 5565 Query 124624 AAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAAC 124683 |||| ||||| |||||||| || ||||| ||||||||||| | || ||||| ||||||| Sbjct 5566 AAATCCAAGACAAAGAAGGAATTCCACCAGATCAACAAAGATTAATCTTTGCTGGAAAAC 5625 Query 124684 AATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATT 124743 |||| || || | |||| ||| ||||| || || || |||||||| || || || | Sbjct 5626 AATTGGAAGACGGAAGAACTTTATCTGATTACAACATCCAGAAAGAATCCACCTTACACT 5685 Query 124744 TGGTTTTACGTTTACGAGGTGGTAT 124768 | |||||| | ||| |||| ||||| Sbjct 5686 TAGTTTTAAGATTAAGAGGAGGTAT 5710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755427830934400