Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 5e-14 >seq3 Length=82673 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||||| ||| | ||| || || ||||| || || ||||| ||||||||||| | Sbjct 24700 TCCTCCTCGTAATCTCAAAACTAAGTGCAACGTAGATTCTTTTTGGATATTGTAATCCGA 24759 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || || || | || || ||||| ||||| | ||||||||| || | || Sbjct 24760 AAGGGTTCGGGAATCTTCCAATTGTTTTCCAGCAAATATTAATCGCTGCTGATCAGGAGG 24819 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCA 43134 | || ||||| || ||| |||| |||| | | || | || | | |||| Sbjct 24820 AATGCCTTCCTTATCT-TGAATTTTGGTTTTCACATTTTCAATAATATCATTTGGCTCCA 24878 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 | || | || || ||||| || |||| |||||| |||||||||||||||||| Sbjct 24879 CTTCAAGGGTTATAGTTTTACCGGTTAACGTCTTCACAAAGATTTGCATTTTT 24931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571796278351240