Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq64 244 1e-59 >seq64 Length=40286 Score = 244 bits (270), Expect = 1e-59 Identities = 608/909 (67%), Gaps = 37/909 (4%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| | | ||| | || || | || ||| | | || ||||||| || Sbjct 17164 TTTAAAAATCTGTGTTAAGACAGAAAACTTGTTCCTTTCTTTGTGCCATAACTCCTGATT 17105 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||||| || |||||| ||||||||||||||||||||||||| ||| |||||| | Sbjct 17104 TTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGAAATAAGAT 17045 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAA---TTCCAACA 16061 |||| || ||| || ||||| | | | | ||| ||| || || ||| || Sbjct 17044 CCATCCAACTAAATGGGTTTTTGGCATGAAAAACTTTTGAGCAGCCTAAACATTCTAA-- 16987 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 || || ||| || |||||||| ||||| ||| |||||| | |||||||| || | Sbjct 16986 -TAGTCGATCAGCAACAAATTCAATATATTGTGACATTAATCTGGAATTCATTCCAAT-A 16929 Query 16122 ATTTAACAGGG-ATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 | | ||| || | || ||| | ||| | |||||| || || ||||| | | | Sbjct 16928 AGATCACATGGTAATGATTCGCAGATAAATGATCTTTCTACATCTACAGCTTCTTTAACT 16869 Query 16181 ATATCTCTTACTACACTATT---TAACGGAGGGTTTAATAAGTGTTTAAACATTATACAA 16237 |||| |||||| | | ||| | | |||||| || |||||| |||| Sbjct 16868 ATATTATGTACTACTTTTTCGGGTAATTTATTTTCTAATAAAC---TATACATTAAACAA 16812 Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297 |||||| ||||||||||| || ||||| || || || || ||| || || || Sbjct 16811 TTAAAATCTGTGTGCAATCCTTCATCTCTACTGATCAATTCATTACTAAAAGTGAGTCCA 16752 Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357 ||||| | ||||||| | ||| || || || ||| ||| ||| | ||| Sbjct 16751 TGCATTTTGTTTTGTTTTTTGAACCAGAAGATTGCACAAAAACTTCCACTAAATAGAATA 16692 Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACG--TTC-TAtttttactttct 16414 |||||||| ||| ||||| | || ||| | | | ||| | | ||| Sbjct 16691 CCTTCAACACAAGCATTGGCAACAATTCTTTCAGCAAAAGAGTTCGTGTCATTA------ 16638 Query 16415 atccattttttagcccaatttgctttttgtttAACA-CAGTTCATGTTCTCTATTGCATT 16473 |||||||| ||||| |||||| | ||| ||| ||| | || || || || |||| Sbjct 16637 ATCCATTTAGCTGCCCATAATGCTTTGTTTTTTACAGCAGGT-ATATTTTCAATAGCATG 16579 Query 16474 AAATAAATAAtttttttCTTT--GCT--ATCTAAAATATAAGTATCTATTAGTAAACTAT 16529 |||||||| || ||||| ||| |||| ||||||| |||| || | ||||| | Sbjct 16578 AAATAAAT----TTAATCTTTCAGCTTCATCTTTAATATAATTATCAATCAACAAACTGT 16523 Query 16530 ACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGG 16589 | |||||||||| ||||| || | |||||||||||| |||||| | | ||||| | Sbjct 16522 AAGTTTCTGAATGGATATTTTCTACAGCTATCTGAAAAGAATAAAACTTTTTTGCTTCAG 16463 Query 16590 ATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAG 16649 ||||||||||| ||||| | | ||| ||||| || |||||||| |||| Sbjct 16462 CAATTTGTACTTCTCTCAAAAACTTACAAGATAAATTTTCTAACACAATTCCATCACTAG 16403 Query 16650 CTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAAGTTTTAA 16707 |||||||||| || | | || || || |||| ||| || || || | ||||||| | Sbjct 16402 CTGCAAAAAATGCCAACACATGGTTTATGAAATGTTTCTCATTGTCTTTTAAAGTTTCA- 16344 Query 16708 CCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGC 16767 | || ||||| | || ||||| | ||||| |||||||||||||||| | || Sbjct 16343 -TAATCTTTTAAATCACTAGACAAATCAATTTCTTCAGCAGTCCAAAAAGAAGCTTCTGC 16285 Query 16768 CTTTTTATA 16776 |||||||| Sbjct 16284 TTTTTTATA 16276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462494754083800