Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq64 188 7e-43 >seq64 Length=40286 Score = 188 bits (208), Expect = 7e-43 Identities = 593/900 (66%), Gaps = 29/900 (3%) Strand=Plus/Minus Query 13889 TCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTA 13948 ||||||| | ||||| || ||||||||| || |||||||||||||||||| || Sbjct 17127 TCTTTGT--GCCATAACTCCTGATTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTT 17070 Query 13949 GTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACAT-AAACAC 14007 ||||| |||| | || ||| ||||| || |||||| ||| ||| ||| ||| || Sbjct 17069 GTTTTTCCTTGTAAAGAAATAAGATCCATCCAACTAAATGGGTTT-TTGGCATGAAAAAC 17011 Query 14008 TTTATCACAACCTAG---TTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGA 14064 ||| || |||| |||||||||| | ||| |||| || ||||||||||| || Sbjct 17010 TTTTGAGCAGCCTAAACATTCTAATAGT---CGATCAGCAACAAATTCAATATATTGTGA 16954 Query 14065 CATTAAATCACAATTCATACCTATTAGTTTTACAGG--AATTATATTGGTTAAAAATTCT 14122 |||||| ||||||| || || || | ||| | ||| || | | | |||| | Sbjct 16953 CATTAATCTGGAATTCATTCCAATAAGATC-ACATGGTAATGAT-TCGCAGATAAATGAT 16896 Query 14123 TTTTCTATAGACACAGCCTCGTTTATAATAATC-GTAATAATTTCATTAGAAGGAGGATA 14181 |||||| | ||||| || || | ||| | ||| || ||| || | | | || Sbjct 16895 CTTTCTACATCTACAGCTTCTTTAACTATATTATGTACTACTTT--TTCGG-GTAATTTA 16839 Query 14182 TTTTAGATGTT--TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTA 14239 |||| | || | |||||||| |||||| || | || ||||||||||| Sbjct 16838 TTTTCTAATAAACTATACATTAAACAATTAAAATCTGTGTGCAATCCTTCATCTCTACTG 16779 Query 14240 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 14299 || | ||| || ||| || | ||| |||| | ||||||| ||||| || ||| Sbjct 16778 ATCAATTCATTACTAAAAGTGAGTCCATGCATTTTGTTTTGTTTTTTGAACCAGAAGATT 16719 Query 14300 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14359 ||| || ||| ||| | || || ||||| |||| || | | || ||| Sbjct 16718 GCACAAAAACTTCCACTAAATAGAATACCTTCAACACAAGCATTGGCAACAATTCTTTCA 16659 Query 14360 CCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATA 14419 |||| || || ||| |||||||| |||||| | ||| ||||| | | Sbjct 16658 GCAAAAGAG---TTCGTGTCATTAATCCATTTAGCTGCCCATAATGCTTTGTTTTTTACA 16602 Query 14420 AAATCCATTGTTTCAATAGCATTAAATAAATGT--TCCTTCTCTTTAGTACTTGAAATGT 14477 | || |||||||||||| |||||||| | || ||| || | || ||| | Sbjct 16601 GCAGGTATATTTTCAATAGCATGAAATAAATTTAATCTTTCAGCTTCATCTTT--AATAT 16544 Query 14478 ATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAAC 14537 | ||||||| | || || || |||| || || || ||||| | ||||||||||||| Sbjct 16543 AATTATCAATCAACAAACTGTAAGTTTCTGAATGGATATTTTCTACAGCTATCTGAAAAG 16484 Query 14538 CATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCG-GCCAAATTT 14596 |||||| | | ||||| | |||||| ||| |||| ||| | | |||||| Sbjct 16483 AATAAAACTTTTTTGCTTCAGCAATTTGTACTTCTCTCAAAAA-CTTACAAGATAAATTT 16425 Query 14597 TCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGC 14656 || || || |||||||||||||||||||||||||| | | || || || | || | Sbjct 16424 TCTAACACAATTCCATCACTAGCTGCAAAAAATGCCAACACATGGTTTATGAAATGTTTC 16365 Query 14657 TCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACT 14716 || | | | | ||| |||| |||||| |||| | ||| | ||| ||| | Sbjct 16364 TCATTGTCTTTTAAAGTTTCATAATCTTTTAAATCACTAGACAAATCAATTTCTTCAGCA 16305 Query 14717 GTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGA 14776 ||||||||| ||| | ||||||||||| | |||| | ||| |||||| || ||| Sbjct 16304 GTCCAAAAAGAAGCTTCTGCTTTTTTATAAAAATCCCAAACTTCCGGATATAAAATCGGA 16245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482327614538440