Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq67 147 3e-30 seq1252 84.2 3e-11 >seq67 Length=41086 Score = 147 bits (162), Expect = 3e-30 Identities = 357/531 (67%), Gaps = 36/531 (7%) Strand=Plus/Plus Query 104232 ATCTTTTCCGTTACTAACTACaaaaaaaGTTTTTTGGAAAGGAGTTGTAGAAGAACTCTT 104291 || |||||||||| |||| ||||| ||| | |||| | ||| | |||||||| | || Sbjct 28355 ATATTTTCCGTTATTAACGACAAAGAAATTGTTTTTAAGAGGCATCATAGAAGAATTGTT 28414 Query 104292 ATGGTTTATTAGCGGGAGTACAGATGT---TTCTGTATTAAATCAAAAAGGAGTTAAAAT 104348 |||||||| || || ||| ||| | | | ||| || ||||| | | || || Sbjct 28415 GTGGTTTATAAGAGGAGAAACAAATGGAAATATTTTGTTAGAT-AAAAATGTGCGAATAT 28473 Query 104349 TTGGAATAAAAATGCAGAATCG---TTTTATACACAACAAAATCTTTTTaaaa---aa-- 104400 |||| || | | || | ||||| ||| ||| |||| | ||| | | || Sbjct 28474 G-GGAAGCTAATGGAACAAGGGAATTTTTAGACA-AACGAAATTTATTTGACAGGGAAGT 28531 Query 104401 -aaTGATTTAGGACCTATTTATGGTTTTCAGTGGAGACATTATGGTGAAAATTATA---- 104455 |||||||||||||| || ||||| |||||||||||||||| ||||| | | |||| Sbjct 28532 GAATGATTTAGGACCCATATATGGATTTCAGTGGAGACATTTTGGTGCAGAATATACGAA 28591 Query 104456 -TTGGGTG-CGATAATAAATATGGTGGTATAGATCAACTCAAAAATATTATTACAACAAT 104513 || || ||| ||| | || ||| | |||||| | |||||| | ||| ||| Sbjct 28592 CATGCATGATGATTATACAAATAAAGGTGTTGATCAATTAAAAAATGTAATTGATTTAAT 28651 Query 104514 TCAAAATGAACCTTGGGATAGAAGAATGATATTATTAGCTTGGAACCCAAAGGATAATTC 104573 | ||||||| ||| | |||||||||| ||||||| || ||||| || || ||| Sbjct 28652 TAAAAATGATCCTAAGAATAGAAGAATTATATTATGTGCATGGAATCCTAAAGATTTAGA 28711 Query 104574 TAAAATGGCACTTCCTCCTTGTCATTGTATAGCACATTTTGATGTAAGTTCAAAAATAAA 104633 ||||||||| | ||||| ||||| |||| | |||| |||| ||| Sbjct 28712 AAAAATGGCATTACCTCCCTGTCA-TGTA----------TTATGTCAGTT---TTATATT 28757 Query 104634 TGGTAAAAGAGAATTGTCTTGTCATTTATTTCAAAGATCTGCAGATATGGGGTTGGGAGT 104693 | |||| | ||||||| ||| | | |||||||||| ||| |||| || ||||| Sbjct 28758 TTTGAAAATA-AATTGTCCTGTATAATGTATCAAAGATCTTGTGATTTGGGCTTAGGAGT 28816 Query 104694 TCCTTTTAACATAGCAAGTTATGCATTATTAACACATATAATAGCTCATGT 104744 ||||||||||| || ||| | | || || || || ||||| || || Sbjct 28817 ACCTTTTAACATTGCTTCCTATTCTATTTTTACTCACATGATAGCCCAAGT 28867 >seq1252 Length=4530 Score = 84.2 bits (92), Expect = 3e-11 Identities = 146/207 (71%), Gaps = 14/207 (7%) Strand=Plus/Minus Query 73917 AGATATCTTCAAAATGGAGATATACTAGTGCTAAATAGACAACCTACTTTACATAAAGCA 73976 ||| || || |||||| ||||| | | | ||| |||||||| ||||||||| | Sbjct 1481 AGACATATTATAAATGGGGATATTGTTTTATTCAATCGACAACCTTCTTTACATAGAATG 1422 Query 73977 TCAATGATGGCTCTTCGAGTTAAAATTATGG-ATGTAAAAACCTTTAAATTTAATCT--- 74032 || || ||| ||| | || | | | |||| || ||||| | ||| |||||| Sbjct 1421 TCTATTATGTCTCATAAAGCAAGAGTAATGGGATATAAAA-CATTTCGTTTTAATGAATG 1363 Query 74033 TGCATGCACTAAACCATATAATGCAGATTTTGATGGAGATGAAATGAATGCTCATGCGCC 74092 ||| || || || |||||||| ||||||||||||||||||||||||| |||| || Sbjct 1362 TGCCTGTACC---CCTTATAATGCTGATTTTGATGGAGATGAAATGAATGTTCATATTCC 1306 Query 74093 TCAATCA---GAAGAAAGTAAAGCTGA 74116 |||| || |||| ||| |||||| Sbjct 1305 TCAAACATTCGAAGCAAG---AGCTGA 1282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679789051420560