Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq444 372 4e-98 seq64 199 5e-46 >seq444 Length=15175 Score = 372 bits (412), Expect = 4e-98 Identities = 1108/1696 (65%), Gaps = 34/1696 (2%) Strand=Plus/Plus Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||| || || ||||| || ||||||||||| | || || | |||||| |||||| Sbjct 4444 TGATCAATAAATGCTCCTCTATCTGCAGCCATATCAATAATATTTTTTTGTTTTATTTCC 4503 Query 62247 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT--TG-TATTCTGAATGGAT 62303 || | |||||| || | | ||| | ||| || || | | || ||| ||||| | Sbjct 4504 CAGACAGTTTTGTACAATTCCTTTAAATCATCAGGTATTTCACTGATATACTGAACACTT 4563 Query 62304 CCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62363 ||| | | || | | || || || |||| ||||| ||| || |||| Sbjct 4564 CCATTGTGAGCAATCAGTTGTTGTTTCATATCTTCATCCCATAGACCTCTATCAAATAAA 4623 Query 62364 ACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAA 62423 || | | ||||| || || ||||| |||||||||| |||||||| | ||| Sbjct 4624 TCTTTCAACAGATGTGGATTTACTACAAAGAATTCTCCACTTAATACTCTTCTGTAATAA 4683 Query 62424 ATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62483 || || || || || ||||| | || ||||||||||| |||||||| | || || || Sbjct 4684 ATGTTGCTAGTGTATGGTTCAAAAGATTCATTATTTCCTAAAATTTGTGATGTAGAAGCC 4743 Query 62484 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 62543 || |||||||| || | |||||| |||||| | ||| | | | | ||||| | |||| Sbjct 4744 GTAGGCATAGGAGCTAATAATAAAGAATTTCTTAAACCATGTTTGATTATTTTTTGTTTT 4803 Query 62544 AGATGTTCCCAATTCCAAAGATCCGACGGTACA---ACANNNNNNNNNNNATATTGTAGA 62600 | | ||||| |||||| | ||| ||| | | || | | Sbjct 4804 AATTCATCCCAGTTCCAATATTTATTATCTACTTTTACATTCCACATGTCAAACTGCAAA 4863 Query 62601 ATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGT 62660 ||||| || || || |||| | |||| ||||| | ||| | || ||| | | Sbjct 4864 ATACCTTTGCTTGCTGGGCTTCCTTTAAATGTTTCATAGGTTCCATGAACCTTAGCCAAT 4923 Query 62661 T-TACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATC 62719 | ||| | | || || || | |||| || |||||||| || | || || | || Sbjct 4924 TCTACGGATT-CTTCCAAAGCTGCAAAATACATAGTTTCAAAAATTCTTTTGTTCAATTC 4982 Query 62720 TTGTGCTTCCGGGCTAT-CAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTT 62778 || || || | | || || ||||||| | || | || || | ||| || ||||||| Sbjct 4983 TTTGGCATC-GTCCGATTCATATGGATATCTCAATAACATGAAGGTGTCAGCCAATCCTT 5041 Query 62779 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGAT 62838 |||||||||| || || |||||||||| | ||| || | || |||||| || |||| Sbjct 5042 GAACACCAATTCCAATTGGTCTATGTCGATGATTTGAAACTTTGGCTTCTTTAACTGGAT 5101 Query 62839 AATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCA 62898 ||||||| | ||||| ||||||| | |||||| ||| | | || | ||| | | Sbjct 5102 AATAATTTCTTTCTATTATTTTATCTAAATTTCTTGTAATAATTCTGGTAATATCATAAA 5161 Query 62899 GTTTGAGAAAATCAAATCGCCCATCT-----AT-TACAAACATGTTCAATGCAACAGATG 62952 |||| ||||||||| | | | | || |||||| | || |||| ||| | Sbjct 5162 GTTTTTTGAAATCAAATTGTCTTTTTTCCATATCTACAAATTTACATAAGGCAATAGAAG 5221 Query 62953 CCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGAT 63012 | | ||| || |||||||| || | | | ||||| || || || ||| | || Sbjct 5222 CTAAATTGCAAACGGCTACTTCCCCTGGAGATGTATATTCTACAATTTCGCAGCATAAAT 5281 Query 63013 TACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 63072 | ||||| || |||||||| || ||||||||||| || |||||| ||||| |||| Sbjct 5282 TGCTACATTTAATAGTTCCCAAGTTTTGTTGATTGGATTTGGAGTTACAAGCATCTTTAT 5341 Query 63073 AAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 63132 | | || |||| || || ||||| || ||| || || ||| || ||| | || Sbjct 5342 ATAACATATATGGGGTTCCTGTTTCTATTTGACTTTGTAAAATGGCAAACCATAAATCTT 5401 Query 63133 GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGA 63192 |||| || | | ||| | | |||| ||| ||| || || ||| ||| | Sbjct 5402 GAGCTGGTACTGTTCTTTTTCCTAATCCTTCTTCTTCATATTTTGTGTATAATTTTTCAA 5461 Query 63193 ACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACT 63252 | || |||||||| | ||| | ||||||||| | |||||||| || | ||| | Sbjct 5462 ATTCTTCTCCCCAGGTTTCACTCAAACCAGGACATTCGTTAGGACACATTAAAGTCCATT 5521 Query 63253 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 63312 || | || || |||| |||||||||||||||||||||||| ||||| ||||| || Sbjct 5522 CTTTATTTTCTTTTACTCTTTTCATAAAGAGATCAGGAATCCAGAGAGCATAAAATAAAT 5581 Query 63313 CTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 63372 |||||| ||| ||| || ||||| || ||| | | ||| | || | | | || Sbjct 5582 CTCTTGCTCTTAATTCTTCTTTTCCGTGGTTTTTTCTCAAATCTAAAAATTCAAATACAT 5641 Query 63373 CAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 63432 | |||||||||||||| | || || || | | || | ||| || || |||| Sbjct 5642 CTGAATGCCACGGTTCAATATAAATTGCAAAAGAACCTTTTCTTTTTCCGCCCCCTTGAT 5701 Query 63433 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATAC 63492 ||| |||||||| |||| |||| | ||||| ||||| || |||| || || || | | Sbjct 5702 CTACATATCTAGCAGTGTCATTAAACACTCTTAACATAGGTATAAGCCCATTGGAATTTC 5761 Query 63493 CATTGGTACCGGAGATAT-AGCCT-----CCACTGGCACGAATATTACTAATTGATAGAC 63546 | ||||| || || | || | || || | || || | | || || || Sbjct 5762 CGTTGGTTCCTCTAATGTAAGAATTTTGACCTCTTAC----ATCTTGC--ACTGCTACAC 5815 Query 63547 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTT 63606 | || || ||||| |||| || | ||| ||| | ||||| || ||| | || |||| Sbjct 5816 CAATACCTCCTGCTGTTTTGCTAATCAGTGCACATTGCTTTAAAGTTTCAAAAATACCTT 5875 Query 63607 CTATGCTATC--ATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664 | ||| ||| | || ||| | || ||| || ||||||||| | | | ||| Sbjct 5876 CAATGGAATCGGACTGA--ATGGACAATAAAAAGCAAGAAGACATTTGTGGTCTTGGAGT 5933 Query 63665 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63724 ||| | || || || || |||| ||| || ||||| |||||| || | | || || Sbjct 5934 TCCGGAGTTGAACAAAGTCGGAGTAGCATGGGTAAAATATTTTTGGGACATCAAATGATA 5993 Query 63725 CGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACA 63783 || || | ||| || | ||| || || ||||| || | | || | ||| |||| Sbjct 5994 TGTTTCCAATGCTCTATCAACATCATCAATG-TGAATACCAATAGAAACTCTCATCAACA 6052 Query 63784 TGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63843 || || ||||| || || |||||||| || ||| ||||| || ||| |||| |||| Sbjct 6053 AATGTTGTGGTCTCTCTACTATTTTGTTATTAATTCGTAACAAATAAGATCTTTCTAAAG 6112 Query 63844 TTTTAAAACCAAAATA 63859 |||| ||||||||||| Sbjct 6113 TTTTGAAACCAAAATA 6128 >seq64 Length=40286 Score = 199 bits (220), Expect = 5e-46 Identities = 392/575 (68%), Gaps = 6/575 (1%) Strand=Plus/Minus Query 33571 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAG 33630 || |||| ||||| ||||| ||||| || || |||||||| || ||||| ||| Sbjct 16825 TATACATTAAACAATTAAAATCTGTGTGCAATCCTTCATCTCTACTGATCAATTCATTAC 16766 Query 33631 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33690 ||| |||||||| ||||| | | ||||| | ||| || || | | || || Sbjct 16765 TAAAAGTGAGTCCATGCATTTTGTTTTGTTTTTTGAACCAGAAGATTGCACAAAAACTTC 16706 Query 33691 CGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 33750 | ||| | || ||||| || |||| ||||| || ||| || || || | Sbjct 16705 CACTAAATAGAATACCTTCAACACAAGCATTGGCAACAATTCTTTCAGCAAAAGAGTTCG 16646 Query 33751 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 |||||| ||||| || ||||| || || ||||||||| ||| || |||| | Sbjct 16645 TGTCATTAATCCATTTAGCTGCCCATAATGCTTTGTTTTTTACAGCAGGTATATTTTCAA 16586 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 | |||| ||| | || | ||||| |||||||| |||| |||| ||||| | || Sbjct 16585 TAGCATGAAATAAATTTAATCTTTCAGCTTCATCTTTAATATAATTATCAATCAACAAAC 16526 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 | || |||| ||||| || ||||| | || |||||||| || || | | || | Sbjct 16525 TGTAAGTTTCTGAATGGATATTTTCTACAGCTATCTGAAAAGAATAAAACTTTTTTGCTT 16466 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCATCA 33989 | | ||| || |||||| | ||||| | | | | ||||||||| ||| ||||||||| Sbjct 16465 CAGCAATTTGTACTTCTCT-CAAAAACTTACAAGATAAATTTTCTAACACAATTCCATCA 16407 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT--AGTT 34047 || ||||||||||| ||||| ||||| ||||| |||| ||| || | | || |||| Sbjct 16406 CTAGCTGCAAAAAATGCCAACACATGGTTTATGAAATGTTTCTCATTGTCTTTTAAAGTT 16347 Query 34048 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 34107 | | |||| || | ||| |||| | ||| | |||||| | |||||||| || || | Sbjct 16346 TCAT--AATCTTTTAAATCACTAGACAAATCAATTTCTTCAGCAGTCCAAAAAGAAGCTT 16289 Query 34108 CTGCCTTTTTATACATATTCCAGATGTCATGATAT 34142 |||| |||||||| | || ||| | || ||||| Sbjct 16288 CTGCTTTTTTATAAAAATCCCAAACTTCCGGATAT 16254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629794115676240