Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemoproteus_20tartakovskyi_20[genbank_20GCA_5F001625125.1_202016- 04-24] 2,983 sequences; 23,209,007 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq444 351 1e-91 seq64 219 6e-52 >seq444 Length=15175 Score = 351 bits (388), Expect = 1e-91 Identities = 1098/1693 (65%), Gaps = 28/1693 (2%) Strand=Plus/Plus Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| || || ||||| || ||||||||||| | || || | |||||| |||||| Sbjct 4444 TGATCAATAAATGCTCCTCTATCTGCAGCCATATCAATAATATTTTTTTGTTTTATTTCC 4503 Query 65040 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT--TG-TATTCTGAATGGAT 65096 || | |||||| || | | ||| | ||| || || | | || ||| ||||| | Sbjct 4504 CAGACAGTTTTGTACAATTCCTTTAAATCATCAGGTATTTCACTGATATACTGAACACTT 4563 Query 65097 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 65156 ||| | || || | | || || || |||| ||||| ||| || |||| Sbjct 4564 CCATTGTGAGCAATCAGTTGTTGTTTCATATCTTCATCCCATAGACCTCTATCAAATAAA 4623 Query 65157 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 65216 || | | ||||| ||||| ||||| ||||||||| |||||||| | ||| Sbjct 4624 TCTTTCAACAGATGTGGATTTACTACAAAGAATTCTCCACTTAATACTCTTCTGTAATAA 4683 Query 65217 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 65276 || || || || || ||||| | ||| ||||||||||| |||||||| | || || || Sbjct 4684 ATGTTGCTAGTGTATGGTTCAAAAGATTCATTATTTCCTAAAATTTGTGATGTAGAAGCC 4743 Query 65277 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 65336 || |||||||| || | |||||| |||||| | ||| | | | | ||||| | |||| Sbjct 4744 GTAGGCATAGGAGCTAATAATAAAGAATTTCTTAAACCATGTTTGATTATTTTTTGTTTT 4803 Query 65337 AGAGGTTCCCAATTCCAAAGATCCGACGGTACA---ACNNNNNNNNNNNNNNNTTGTAGA 65393 | ||||| |||||| | ||| || || | | Sbjct 4804 AATTCATCCCAGTTCCAATATTTATTATCTACTTTTACATTCCACATGTCAAACTGCAAA 4863 Query 65394 ATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGT 65453 ||||| || || || |||| | |||| || || | ||| | || ||| | | Sbjct 4864 ATACCTTTGCTTGCTGGGCTTCCTTTAAATGTTTCATAGGTTCCATGAACCTTAGCCAAT 4923 Query 65454 TC-ACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 65512 || || | | || || || | |||| || ||||| || || | || || | || Sbjct 4924 TCTACGGATT-CTTCCAAAGCTGCAAAATACATAGTTTCAAAAATTCTTTTGTTCAATTC 4982 Query 65513 TTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 65572 || || || ||| ||||||| | || | || || | ||| || |||||||| Sbjct 4983 TTTGGCATCGTCCGATTCATATGGATATCTCAATAACATGAAGGTGTCAGCCAATCCTTG 5042 Query 65573 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 65632 ||||||||| || || |||||||||| | ||| || | || |||||| || ||||| Sbjct 5043 AACACCAATTCCAATTGGTCTATGTCGATGATTTGAAACTTTGGCTTCTTTAACTGGATA 5102 Query 65633 ATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAG 65692 |||||| | ||||| ||||||| | |||||| ||| | | || | ||| | || Sbjct 5103 ATAATTTCTTTCTATTATTTTATCTAAATTTCTTGTAATAATTCTGGTAATATCATAAAG 5162 Query 65693 TTTGAGAAAATCAAA---TCGCTCATCTAT---TACAAACATGTTCAATGCAACAGATGC 65746 ||| |||||||| || | || || |||||| | || |||| ||| || Sbjct 5163 TTTTTTGAAATCAAATTGTCTTTTTTCCATATCTACAAATTTACATAAGGCAATAGAAGC 5222 Query 65747 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 65806 | ||| ||||||||||| || | | | ||||| || || || ||| | ||| Sbjct 5223 TAAATTGCAAACGGCTACTTCCCCTGGAGATGTATATTCTACAATTTCGCAGCATAAATT 5282 Query 65807 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 65866 ||||| || || ||||| || ||||||||||| || |||||| ||||| ||||| Sbjct 5283 GCTACATTTAATAGTTCCCAAGTTTTGTTGATTGGATTTGGAGTTACAAGCATCTTTATA 5342 Query 65867 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 65926 | || |||| || || ||||| || ||| || || ||| || ||| | || | Sbjct 5343 TAACATATATGGGGTTCCTGTTTCTATTTGACTTTGTAAAATGGCAAACCATAAATCTTG 5402 Query 65927 AGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAA 65986 ||| || | | ||| | |||| ||| ||| ||| || ||| ||| || Sbjct 5403 AGCTGGTACTGTTCTTTTTCCTAATCCTTCTTCTTCATATTTTGTGTATAATTTTTCAAA 5462 Query 65987 CTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTC 66046 || |||||||| | ||| ||||||||||| | |||||||| || | ||| || Sbjct 5463 TTCTTCTCCCCAGGTTTCACTCAAACCAGGACATTCGTTAGGACACATTAAAGTCCATTC 5522 Query 66047 TCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATC 66106 | | || || |||| |||||||||||||||||||||||| ||||| ||||||||| Sbjct 5523 TTTATTTTCTTTTACTCTTTTCATAAAGAGATCAGGAATCCAGAGAGCATAAAATAAATC 5582 Query 66107 TCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 66166 ||| | ||| ||| || ||||| || ||| | | ||| | || | | | ||| Sbjct 5583 TCTTGCTCTTAATTCTTCTTTTCCGTGGTTTTTTCTCAAATCTAAAAATTCAAATACATC 5642 Query 66167 ATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 66226 ||||||||||||| | || || || | | || | ||| || || ||||| Sbjct 5643 TGAATGCCACGGTTCAATATAAATTGCAAAAGAACCTTTTCTTTTTCCGCCCCCTTGATC 5702 Query 66227 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACC 66286 || |||||||| |||| |||| | ||||| ||||| || |||| |||||||| | || Sbjct 5703 TACATATCTAGCAGTGTCATTAAACACTCTTAACATAGGTATAAGCCCATTGGAATTTCC 5762 Query 66287 ATTGGTCCCGGAGATAT-AGCTT-----CCACTTGCACGAATATTACTAATTGATAGACC 66340 ||||| || || | || | || ||| | || || | | || || ||| Sbjct 5763 GTTGGTTCCTCTAATGTAAGAATTTTGACCTCTTAC----ATCTTGC--ACTGCTACACC 5816 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 66400 || || ||||| |||| || | ||| ||| | ||||| || ||| | || || || Sbjct 5817 AATACCTCCTGCTGTTTTGCTAATCAGTGCACATTGCTTTAAAGTTTCAAAAATACCTTC 5876 Query 66401 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 66460 || ||| | ||| | || ||| || ||||||||| | | |||||| Sbjct 5877 AATGGAATCGGACTGAATGGACAATAAAAAGCAAGAAGACATTTGTGGTCTTGGAGTTCC 5936 Query 66461 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 66520 | || || || || |||| ||| || ||||| |||||| || | | || || || Sbjct 5937 GGAGTTGAACAAAGTCGGAGTAGCATGGGTAAAATATTTTTGGGACATCAAATGATATGT 5996 Query 66521 CTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGT 66579 || | ||| || | ||| || || ||||| || | | || | ||| |||| | Sbjct 5997 TTCCAATGCTCTATCAACATCATCAATG-TGAATACCAATAGAAACTCTCATCAACAAAT 6055 Query 66580 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 66639 | || ||||| || || || ||||| || ||| ||||| || ||| |||| ||||||| Sbjct 6056 GTTGTGGTCTCTCTACTATTTTGTTATTAATTCGTAACAAATAAGATCTTTCTAAAGTTT 6115 Query 66640 TAAAACCAAAATA 66652 | ||||||||||| Sbjct 6116 TGAAACCAAAATA 6128 >seq64 Length=40286 Score = 219 bits (242), Expect = 6e-52 Identities = 592/893 (66%), Gaps = 26/893 (3%) Strand=Plus/Minus Query 35848 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 35907 ||| | ||||||||| |||||| || || | || | |||||| || ||||| ||||| Sbjct 17124 TTGTGCCATAACTCCTGATTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTT 17065 Query 35908 ACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAttttttt 35967 |||| ||| || ||| ||||| || ||||| || | ||| | ||| |||| Sbjct 17064 TCCTTGTAAAGAAATAAGATCCATCCAACTAAATGGGTTTTTGGCATGAAAAACTTTTGA 17005 Query 35968 AAATCCCAA---TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT 36024 | || || ||| ||| | || ||| || |||||||| |||||| | ||| | Sbjct 17004 GCAGCCTAAACATTCT--AAT-AGTCGATCAGCAACAAATTCAATATATTGTGACATTAA 16948 Query 36025 TTCACAATTCATTCCTATAAGTTTAACTGGAA--GAGCCACAGTAAGAAATTCTTGTTCA 36082 | |||||||||| ||||| | | ||| | || | ||| | |||| | ||| Sbjct 16947 TCTGGAATTCATTCCAATAAGATCACATGGTAATGATTCGCAG--ATAAATGATCTTTCT 16890 Query 36083 ATAGAGACCGCGTCTGT---TATAATAGATATTACTGTTTCT--TCACTCGGTGGATACA 36137 | | || || ||| | |||| || || |||| |||| | | | | || Sbjct 16889 ACATCTACAGCTTCTTTAACTATATTATGTACTACTTTTTCGGGTAATTTATTTTCTA-- 16832 Query 36138 ATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTA 36197 ||||| || |||| ||||| ||||| ||| | || || |||||||| || | Sbjct 16831 ATAAAC---TATACATTAAACAATTAAAATCTGTGTGCAATCCTTCATCTCTACTGATCA 16775 Query 36198 ATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACG 36257 |||| || ||| |||||||| ||||| | | ||||| | ||| || || | Sbjct 16774 ATTCATTACTAAAAGTGAGTCCATGCATTTTGTTTTGTTTTTTGAACCAGAAGATTGCAC 16715 Query 36258 CAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCAT 36317 ||| |||| ||| | ||| ||||| || ||| ||||| || ||| || || Sbjct 16714 AAAAACTTCCACTAAATAGAATACCTTCAACACAAGCATTGGCAACAATTCTTTCAGCAA 16655 Query 36318 AACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA 36377 || | |||||| ||||| || ||||| || || ||||||||| ||| | Sbjct 16654 AAGAGTTCGTGTCATTAATCCATTTAGCTGCCCATAATGCTTTGTTTTTTACAGCAGGTA 16595 Query 36378 TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAA 36437 | | || ||||||| ||| | || | ||||| |||||||| ||| |||||| Sbjct 16594 TATTTTCAATAGCATGAAATAAATTTAATCTTTCAGCTTCATCTTTAATATAATTATCAA 16535 Query 36438 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAAC 36497 |||| | ||| || |||| ||||| || ||||| | || || ||||| || || Sbjct 16534 TCAACAAACTGTAAGTTTCTGAATGGATATTTTCTACAGCTATCTGAAAAGAATAAAACT 16475 Query 36498 ATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACT 36556 | | || || | ||| ||||||||| | ||||| | | | | ||||||||| ||| Sbjct 16474 TTTTTGCTTCAGCAATTTGTACTTCTCT-CAAAAACTTACAAGATAAATTTTCTAACACA 16416 Query 36557 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGT 36616 ||||| ||||| ||||||||||| ||||| ||||| ||||| |||| ||| || || | Sbjct 16415 ATTCCATCACTAGCTGCAAAAAATGCCAACACATGGTTTATGAAATGTTTCTCATTGTCT 16356 Query 36617 GTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 36674 || ||||| | |||| || | ||| |||| | ||| | |||||| | ||||||| Sbjct 16355 TTTAAAGTTTCAT--AATCTTTTAAATCACTAGACAAATCAATTTCTTCAGCAGTCCAAA 16298 Query 36675 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 36727 | || || ||||| |||||||| | || ||| | || ||||| ||| ||| Sbjct 16297 AAGAAGCTTCTGCTTTTTTATAAAAATCCCAAACTTCCGGATATAAAATCGGA 16245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658148258381720